halophFGD

Basic Information

Locus ID: Tel1E01G209700

Species & Taxonomic ID: Thinopyrum elongatum & 4588

Genome Assembly: GWHABKY00000000

Description: WD40 repeats

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
chr1	133878247	133886881	+	Tel1E01G209700

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
8.90	42,812.49 Da	46.45	78.23	-0.15

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
SUPERFAMILY	SSF50978	WD40 repeat-like	24	267	7.83E-26	IPR036322
Gene3D	G3DSA:2.130.10.10	-	21	293	1.1E-17	IPR015943
SMART	SM00320	WD40_4	181	221	0.053	IPR001680
SMART	SM00320	WD40_4	224	265	0.29	IPR001680

Gene Ontology

Molecular Function:

GO:0005515 (protein binding)

Best hit

Source	Best Hit ID	Description
TAIR	AT3G56440.1	homolog of yeast autophagy 18 (ATG18) D.
RefSeq	XP_044448669.1	autophagy-related protein 18d-like [Triticum aestivum]
Swiss-Prot	Q0WPK3	Autophagy-related protein 18d OS=Arabidopsis thaliana OX=3702 GN=ATG18D PE=2 SV=1
TrEMBL	U3PVZ1	Autophagy-related protein 18c OS=Triticum aestivum OX=4565 GN=ATG18c PE=2 SV=1

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
No sample metadata found.

Network

No network data available for this species.

Orthology

Family	Species	Count	Orthologous Genes
Acanthaceae	Avicennia marina	4	jg10095, jg34063, jg35211, jg8871
Aizoaceae	Mesembryanthemum crystallinum	3	gene_10418, gene_24398, gene_6321
Amaranthaceae	Atriplex hortensis	3	Ah005758, Ah029935, Ah032174
Amaranthaceae	Beta vulgaris	2	BVRB_2g038550, BVRB_7g164090
Amaranthaceae	Salicornia bigelovii	6	Sbi_jg1411, Sbi_jg17114, Sbi_jg30094, Sbi_jg35161 ... Sbi_jg43543, Sbi_jg61660
Amaranthaceae	Salicornia europaea	3	Seu_jg18359, Seu_jg3326, Seu_jg379
Amaranthaceae	Suaeda aralocaspica	2	GOSA_00003508, GOSA_00004134
Amaranthaceae	Suaeda glauca	7	Sgl24510, Sgl24523, Sgl29690, Sgl66126, Sgl70436, Sgl73754 ... Sgl77260
Amaranthaceae	Chenopodium album	8	gene:ENSEOMG00000006243, gene:ENSEOMG00000011629 ... gene:ENSEOMG00000015551, gene:ENSEOMG00000020895, gene:ENSEOMG00000029774, gene:ENSEOMG00000034296, gene:ENSEOMG00000039340, gene:ENSEOMG00000049890
Amaranthaceae	Chenopodium quinoa	6	CQ.Regalona.r1.2AG0005350, CQ.Regalona.r1.2BG0004460 ... CQ.Regalona.r1.4AG0008270, CQ.Regalona.r1.4BG0008410, CQ.Regalona.r1.7AG0013820, CQ.Regalona.r1.7BG0015720
Anacardiaceae	Pistacia vera	2	pistato.v30009560, pistato.v30083820
Apiaceae	Apium graveolens	4	Ag10G01835, Ag10G02709, Ag4G01795, Ag7G01603
Arecaceae	Cocos nucifera	5	COCNU_04G004930, COCNU_04G012530, COCNU_16G003310 ... COCNU_16G005530, scaffold001400G000050
Arecaceae	Phoenix dactylifera	4	gene-LOC103707285, gene-LOC103715269, gene-LOC103716696 ... gene-LOC120110184
Asparagaceae	Asparagus officinalis	5	AsparagusV1_03.3016.V1.1, AsparagusV1_05.585.V1.1 ... AsparagusV1_05.923.V1.1, AsparagusV1_07.746.V1.1, AsparagusV1_Unassigned.145.V1.1
Asteraceae	Flaveria trinervia	3	Ftri10G26838, Ftri3G18597, Ftri8G10558
Brassicaceae	Arabidopsis thaliana	4	AT2G40810.1, AT2G47720.1, AT3G56440.1, AT3G62770.1
Brassicaceae	Eutrema salsugineum	3	Thhalv10005977m.g.v1.0, Thhalv10006031m.g.v1.0 ... Thhalv10016737m.g.v1.0
Brassicaceae	Schrenkiella parvula	3	Sp4g23130.v2.2, Sp5g00750.v2.2, Sp5g06070.v2.2
Brassicaceae	Brassica nigra	4	BniB01g004580.2N, BniB06g052230.2N, BniB06g061440.2N ... BniB08g071050.2N
Casuarinaceae	Casuarina equisetifolia	3	Ceq02G0008, Ceq06G0926, Ceq06G0927
Casuarinaceae	Casuarina glauca	2	Cgl02G0012, Cgl06G0954
Cymodoceaceae	Cymodocea nodosa	3	gene.Cymno02g00960, gene.Cymno03g13440, gene.Cymno18g00910
Dunaliellaceae	Dunaliella salina	1	Dusal.0227s00002.v1.0
Hydrocharitaceae	Thalassia testudinum	3	gene.Thate02g08740, gene.Thate05g01250, gene.Thate08g11430
Malvaceae	Hibiscus hamabo Siebold & Zucc.	2	nbisL1-mrna-1863, nbisL1-mrna-6269
Nitrariaceae	Nitraria sibirica	2	evm.TU.LG02.1649, evm.TU.LG04.314
Plantaginaceae	Plantago ovata	4	Pov_00008267, Pov_00024850, Pov_00024851, Pov_00036311
Plumbaginaceae	Limonium bicolor	6	Lb1G02500, Lb1G07582, Lb1G07625, Lb2G12921, Lb4G21554 ... Lb4G21561
Poaceae	Echinochloa crus-galli	12	AH02.4425, AH02.517, AH03.4014, AH05.1109, BH02.4465 ... BH02.535, BH03.311, BH05.1378, CH02.4513, CH02.596, CH05.1309, CH07.165
Poaceae	Eleusine coracana subsp. coracana	8	gene-QOZ80_1AG0011110, gene-QOZ80_1AG0045660 ... gene-QOZ80_1BG0059710, gene-QOZ80_1BG0095650, gene-QOZ80_5AG0403330, gene-QOZ80_5BG0451710, gene-QOZ80_7AG0581220, gene-QOZ80_7BG0612320
Poaceae	Hordeum vulgare	4	HORVU.MOREX.r3.1HG0026100.1, HORVU.MOREX.r3.3HG0234270.1 ... HORVU.MOREX.r3.3HG0313730.1, HORVU.MOREX.r3.4HG0380910.1
Poaceae	Lolium multiflorum	6	gene-QYE76_009815, gene-QYE76_018187, gene-QYE76_038861 ... gene-QYE76_038862, gene-QYE76_049936, gene-QYE76_057676
Poaceae	Oryza coarctata	6	Oco01G002680, Oco01G029290, Oco02G002730, Oco02G030490 ... Oco13G015400, Oco14G016230
Poaceae	Oryza sativa	4	LOC_Os01g07400.1, LOC_Os01g70780.1, LOC_Os05g07710.3 ... LOC_Os07g47410.1
Poaceae	Paspalum vaginatum	3	gene-BS78_03G051700, gene-BS78_03G394100 ... gene-BS78_09G066300
Poaceae	Puccinellia tenuiflora	6	Pt_Chr0107882, Pt_Chr0207424, Pt_Chr0306736, Pt_Chr0501698 ... Pt_Chr0501743, Pt_Chr0600710
Poaceae	Sporobolus alterniflorus	11	Chr01G011680, Chr02G001700, Chr02G001770, Chr02G019440 ... Chr03G004930, Chr03G023340, Chr05G010410, Chr05G032780, Chr08G000030, Chr08G018660, Chr20G010820
Poaceae	Thinopyrum elongatum	5	Tel1E01G209700, Tel2E01G245900, Tel3E01G166700 ... Tel3E01G717400, Tel4E01G322300
Poaceae	Triticum dicoccoides	8	gene_TRIDC1AG014430, gene_TRIDC1BG019650 ... gene_TRIDC3AG011460, gene_TRIDC3AG064120, gene_TRIDC3BG015410, gene_TRIDC3BG072040, gene_TRIDC4AG017410, gene_TRIDC4BG034370
Poaceae	Triticum aestivum	9	TraesCS1A02G112700.1, TraesCS1B02G132900.1 ... TraesCS1D02G114300.1, TraesCS3A02G095300.1, TraesCS3A02G453200.1, TraesCS3B02G110900.1, TraesCS3B02G490900.1, TraesCS3D02G095500.1, TraesCS4B02G179000.2
Poaceae	Zea mays	4	Zm00001eb123160_P001, Zm00001eb142210_P001 ... Zm00001eb336470_P001, Zm00001eb363500_P001
Poaceae	Zoysia japonica	7	nbis-gene-10891, nbis-gene-13104, nbis-gene-136 ... nbis-gene-23530, nbis-gene-28234, nbis-gene-58212, nbis-gene-6868
Poaceae	Zoysia macrostachya	6	Zma_g10020, Zma_g11877, Zma_g26511, Zma_g7046, Zma_g7667 ... Zma_g9332
Portulacaceae	Portulaca oleracea	5	evm.TU.LG03.813, evm.TU.LG05.447, evm.TU.LG08.672 ... evm.TU.LG12.921, evm.TU.LG22.1277
Posidoniaceae	Posidonia oceanica	3	gene.Posoc01g27630, gene.Posoc02g33070, gene.Posoc07g12670
Rhizophoraceae	Bruguiera sexangula	3	evm.TU.Scaffold_1_RagTag.129, evm.TU.Scaffold_5_RagTag.885 ... evm.TU.Scaffold_9_RagTag.834
Rhizophoraceae	Carallia pectinifolia	3	nbisL1-mrna-11460, nbisL1-mrna-8137, nbisL1-mrna-8143
Rhizophoraceae	Ceriops tagal	3	nbisL1-mrna-1712, nbisL1-mrna-1881, nbisL1-mrna-5125
Rhizophoraceae	Ceriops zippeliana	3	nbisL1-mrna-11511, nbisL1-mrna-18465, nbisL1-mrna-5209
Rhizophoraceae	Kandelia candel	3	evm.TU.utg000003l.574, evm.TU.utg000006l.237 ... evm.TU.utg000012l.94
Rhizophoraceae	Kandelia obovata	3	Maker00009869, Maker00011254, Maker00013028
Rhizophoraceae	Rhizophora apiculata	3	nbisL1-mrna-10065, nbisL1-mrna-1551, nbisL1-mrna-7865
Rhizophoraceae	Rhizophora mangle	3	nbisL1-mrna-119, nbisL1-mrna-5217, nbisL1-mrna-7504
Salicaceae	Populus euphratica	6	populus_peu13375, populus_peu15707, populus_peu19121 ... populus_peu27230, populus_peu31211, populus_peu37176
Solanaceae	Lycium barbarum	4	gene-LOC132609568, gene-LOC132635574, gene-LOC132638431 ... gene-LOC132645935
Solanaceae	Solanum chilense	3	SOLCI001649000, SOLCI002271800, SOLCI003536000
Solanaceae	Solanum pennellii	3	gene-LOC107008157, gene-LOC107023781, gene-LOC107027240
Tamaricaceae	Reaumuria soongarica	3	STRG.10618_chr07_-, STRG.32329_chr09_-, STRG.8405_chr05_+
Tamaricaceae	Tamarix chinensis	3	TC01G3979, TC02G1357, TC08G0615
Zosteraceae	Zostera marina	2	Zosma01g11850.v3.1, Zosma06g22110.v3.1