Basic Information
Locus ID:
Tel1E01G195100
Species & Taxonomic ID:
Thinopyrum elongatum & 4588
Genome Assembly:
GWHABKY00000000
Description:
Zinc finger, C3HC4 type (RING finger)
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr1 | 120303351 | 120305905 | - | Tel1E01G195100 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.42 | 58,624.31 Da | 66.42 | 53.11 | -0.74 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16481 | RING-H2_TTC3 | 488 | 529 | 1.27891E-17 | - |
| Pfam | PF13639 | Ring finger domain | 487 | 529 | 5.9E-12 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 483 | 532 | 3.3E-18 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 464 | 535 | 1.6E-18 | IPR013083 |
| SMART | SM00184 | ring_2 | 488 | 528 | 1.9E-7 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 488 | 529 | 12.636808 | IPR001841 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 20 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 197 | 223 | - | - |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G37150.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_048569467.1 | probable E3 ubiquitin-protein ligase RHG1A isoform X1 [Triticum urartu] | 0 |
| Q5QLR5 | Probable E3 ubiquitin-protein ligase ZFP1 OS=Oryza sativa subsp. japonica OX=39947 GN=ZFP1 PE=1 SV=1 | 0 | |
| TrEMBL | A0A8R7JWH7 | RING-type domain-containing protein OS=Triticum urartu OX=4572 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology