Basic Information
Locus ID:
Tel1E01G144800
Species & Taxonomic ID:
Thinopyrum elongatum & 4588
Genome Assembly:
GWHABKY00000000
Description:
WD40 repeats
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr1 | 80715901 | 80716529 | - | Tel1E01G144800 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.90 | 20,324.09 Da | 60.91 | 73.20 | -0.40 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00400 | WD domain, G-beta repeat | 114 | 146 | 0.01 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 78 | 109 | 0.14 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 83 | 156 | 6.04E-14 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 16 | 176 | 1.0E-15 | IPR015943 |
| SMART | SM00320 | WD40_4 | 76 | 109 | 1.7 | IPR001680 |
| SMART | SM00320 | WD40_4 | 112 | 151 | 0.0072 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 84 | 118 | 8.870959 | IPR001680 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| RefSeq | XP_039024828.1 | WD repeat-containing protein 3-like [Hibiscus syriacus] | 0 |
| E3LB80 | Eukaryotic translation initiation factor 3 subunit I OS=Puccinia graminis f. sp. tritici (strain CRL 75-36-700-3 / race SCCL) OX=418459 GN=TIF34 PE=3 SV=2 | 0 | |
| TrEMBL | A0A453J1F5 | WD_REPEATS_REGION domain-containing protein OS=Aegilops tauschii subsp. strangulata OX=200361 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Amaranthaceae | Suaeda aralocaspica | 2 | GOSA_00016741, GOSA_00024236 |
| Poaceae | Thinopyrum elongatum | 1 | Tel1E01G144800 |
| Poaceae | Triticum dicoccoides | 3 | gene_TRIDC1AG009760, gene_TRIDC2AG026810 ... |
| Poaceae | Triticum aestivum | 1 | TraesCS2A02G206900.2 |