halophFGD

Basic Information

Locus ID: Tel1E01G119100

Species & Taxonomic ID: Thinopyrum elongatum & 4588

Genome Assembly: GWHABKY00000000

Description: PPR repeat

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
chr1	66495707	66497800	-	Tel1E01G119100

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
7.69	77,091.15 Da	29.64	93.34	0.12

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
Pfam	PF13041	PPR repeat family	277	324	2.9E-14	IPR002885
Pfam	PF01535	PPR repeat	244	273	9.0E-4	IPR002885
Pfam	PF01535	PPR repeat	66	90	1.2	IPR002885
Pfam	PF13041	PPR repeat family	345	395	3.8E-7	IPR002885
Pfam	PF13041	PPR repeat family	451	499	1.7E-16	IPR002885
Pfam	PF13041	PPR repeat family	171	219	3.1E-14	IPR002885
Pfam	PF13041	PPR repeat family	101	149	1.0E-16	IPR002885
Pfam	PF01535	PPR repeat	525	549	0.001	IPR002885
Pfam	PF13041	PPR repeat family	557	600	5.5E-9	IPR002885
Pfam	PF12854	PPR repeat	416	445	7.5E-11	IPR002885
SUPERFAMILY	SSF81901	HCP-like	175	312	3.92E-5	-
Gene3D	G3DSA:1.25.40.10	Tetratricopeptide repeat domain	164	233	3.4E-20	IPR011990
Gene3D	G3DSA:1.25.40.10	Tetratricopeptide repeat domain	305	375	8.3E-18	IPR011990
Gene3D	G3DSA:1.25.40.10	Tetratricopeptide repeat domain	471	585	1.7E-29	IPR011990
Gene3D	G3DSA:1.25.40.10	Tetratricopeptide repeat domain	586	655	4.0E-9	IPR011990
Gene3D	G3DSA:1.25.40.10	Tetratricopeptide repeat domain	376	470	3.1E-27	IPR011990
Gene3D	G3DSA:1.25.40.10	Tetratricopeptide repeat domain	7	91	2.9E-11	IPR011990
Gene3D	G3DSA:1.25.40.10	Tetratricopeptide repeat domain	92	163	8.1E-21	IPR011990
Gene3D	G3DSA:1.25.40.10	Tetratricopeptide repeat domain	234	304	4.6E-17	IPR011990
TIGRFAM	TIGR00756	PPR: pentatricopeptide repeat domain	313	345	9.8E-7	IPR002885
TIGRFAM	TIGR00756	PPR: pentatricopeptide repeat domain	595	627	1.6E-6	IPR002885
TIGRFAM	TIGR00756	PPR: pentatricopeptide repeat domain	559	593	3.7E-4	IPR002885
TIGRFAM	TIGR00756	PPR: pentatricopeptide repeat domain	489	522	1.5E-7	IPR002885
TIGRFAM	TIGR00756	PPR: pentatricopeptide repeat domain	348	382	2.4E-6	IPR002885
TIGRFAM	TIGR00756	PPR: pentatricopeptide repeat domain	208	242	5.5E-8	IPR002885
TIGRFAM	TIGR00756	PPR: pentatricopeptide repeat domain	33	65	1.2E-4	IPR002885
TIGRFAM	TIGR00756	PPR: pentatricopeptide repeat domain	103	137	2.1E-9	IPR002885
TIGRFAM	TIGR00756	PPR: pentatricopeptide repeat domain	244	277	6.2E-6	IPR002885
TIGRFAM	TIGR00756	PPR: pentatricopeptide repeat domain	138	171	1.3E-7	IPR002885
TIGRFAM	TIGR00756	PPR: pentatricopeptide repeat domain	278	312	1.4E-9	IPR002885
TIGRFAM	TIGR00756	PPR: pentatricopeptide repeat domain	419	453	9.1E-8	IPR002885
TIGRFAM	TIGR00756	PPR: pentatricopeptide repeat domain	173	207	2.7E-8	IPR002885
TIGRFAM	TIGR00756	PPR: pentatricopeptide repeat domain	525	555	6.5E-5	IPR002885
TIGRFAM	TIGR00756	PPR: pentatricopeptide repeat domain	454	488	1.3E-11	IPR002885
ProSiteProfiles	PS51375	Pentatricopeptide (PPR) repeat profile.	452	486	14.348399	IPR002885
ProSiteProfiles	PS51375	Pentatricopeptide (PPR) repeat profile.	241	275	9.821383	IPR002885
ProSiteProfiles	PS51375	Pentatricopeptide (PPR) repeat profile.	382	416	8.933517	IPR002885
ProSiteProfiles	PS51375	Pentatricopeptide (PPR) repeat profile.	276	310	12.616514	IPR002885
ProSiteProfiles	PS51375	Pentatricopeptide (PPR) repeat profile.	346	380	9.854266	IPR002885
ProSiteProfiles	PS51375	Pentatricopeptide (PPR) repeat profile.	311	345	12.572669	IPR002885
ProSiteProfiles	PS51375	Pentatricopeptide (PPR) repeat profile.	522	556	9.580234	IPR002885
ProSiteProfiles	PS51375	Pentatricopeptide (PPR) repeat profile.	592	626	11.39981	IPR002885
ProSiteProfiles	PS51375	Pentatricopeptide (PPR) repeat profile.	487	521	10.566751	IPR002885
ProSiteProfiles	PS51375	Pentatricopeptide (PPR) repeat profile.	417	451	12.079411	IPR002885
ProSiteProfiles	PS51375	Pentatricopeptide (PPR) repeat profile.	206	240	12.145178	IPR002885
ProSiteProfiles	PS51375	Pentatricopeptide (PPR) repeat profile.	28	63	9.339086	IPR002885
ProSiteProfiles	PS51375	Pentatricopeptide (PPR) repeat profile.	557	591	10.150222	IPR002885
ProSiteProfiles	PS51375	Pentatricopeptide (PPR) repeat profile.	171	205	12.956314	IPR002885
ProSiteProfiles	PS51375	Pentatricopeptide (PPR) repeat profile.	136	170	12.594591	IPR002885
ProSiteProfiles	PS51375	Pentatricopeptide (PPR) repeat profile.	101	135	11.904029	IPR002885

Gene Ontology

Molecular Function:

GO:0005515 (protein binding)

KEGG Pathway

KO Term:

K17964 (leucine-rich PPR motif-containing protein, mitochondrial)

Best hit

Source	Best Hit ID	Description
RefSeq	XP_040250908.1	protein Rf1, mitochondrial-like [Aegilops tauschii subsp. strangulata]
Swiss-Prot	Q76C99	Protein Rf1, mitochondrial OS=Oryza sativa subsp. indica OX=39946 GN=Rf1 PE=2 SV=1
TrEMBL	A0A3B5ZQI1	Pentatricopeptide repeat-containing protein OS=Triticum aestivum OX=4565 PE=4 SV=1

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
No sample metadata found.

Network

No network data available for this species.

Orthology

Family	Species	Count	Orthologous Genes
Amaranthaceae	Chenopodium quinoa	1	CQ.Regalona.r1.4AG0007790
Arecaceae	Cocos nucifera	1	scaffold010752G000010
Asparagaceae	Asparagus officinalis	1	AsparagusV1_09.1150.V1.1
Cymodoceaceae	Cymodocea nodosa	4	gene.Cymno02g00170, gene.Cymno02g02240, gene.Cymno03g06300 ... gene.Cymno15g00330
Hydrocharitaceae	Thalassia testudinum	5	gene.Thate02g06920, gene.Thate08g09850, gene.Thate08g14280 ... gene.Thate08g21140, gene.Thate09g04990
Poaceae	Echinochloa crus-galli	20	AH01.1459, AH01.1700, AH04.2051, AH06.2011, BH01.1832 ... BH01.1871, BH01.1904, BH01.1913, BH01.1959, BH04.2089, CH01.1979, CH01.1980, CH01.2004, CH01.2019, CH01.2133, CH01.2164, CH03.2508, CH04.2418, CH04.280, Contig3341.1
Poaceae	Eleusine coracana subsp. coracana	20	gene-QOZ80_2AG0112480, gene-QOZ80_2AG0112540 ... gene-QOZ80_2AG0112570, gene-QOZ80_2AG0112590, gene-QOZ80_2AG0113350, gene-QOZ80_2AG0113380, gene-QOZ80_2BG0165660, gene-QOZ80_2BG0165840, gene-QOZ80_2BG0165960, gene-QOZ80_2BG0165970, gene-QOZ80_2BG0166300, gene-QOZ80_2BG0166610, gene-QOZ80_2BG0171980, gene-QOZ80_4AG0321840, gene-QOZ80_4AG0321850, gene-QOZ80_4BG0357420, gene-QOZ80_5AG0366520, gene-QOZ80_5BG0414280, gene-QOZ80_7BG0607290, gene-QOZ80_9BG0713290
Poaceae	Hordeum vulgare	21	HORVU.MOREX.r3.1HG0005110.1.CDS1 ... HORVU.MOREX.r3.1HG0011250.1.CDS1, HORVU.MOREX.r3.1HG0011400.1.CDS1, HORVU.MOREX.r3.1HG0011450.1.CDS1, HORVU.MOREX.r3.1HG0011510.1.CDS1, HORVU.MOREX.r3.1HG0011560.1.CDS1, HORVU.MOREX.r3.1HG0011590.1.CDS1, HORVU.MOREX.r3.1HG0011680.1.CDS1, HORVU.MOREX.r3.1HG0011730.1.CDS1, HORVU.MOREX.r3.1HG0011760.1.CDS1, HORVU.MOREX.r3.1HG0011790.1.CDS1, HORVU.MOREX.r3.1HG0014490.1.CDS1, HORVU.MOREX.r3.1HG0014640.1.CDS1, HORVU.MOREX.r3.1HG0014650.1.CDS1, HORVU.MOREX.r3.1HG0014660.1.CDS1, HORVU.MOREX.r3.1HG0016620.1.CDS1, HORVU.MOREX.r3.6HG0541240.1, HORVU.MOREX.r3.6HG0551520.1.CDS1, HORVU.MOREX.r3.6HG0555030.1.CDS1, HORVU.MOREX.r3.6HG0555060.1.CDS1, HORVU.MOREX.r3.6HG0616090.1.CDS1
Poaceae	Lolium multiflorum	45	gene-QYE76_007092, gene-QYE76_007147, gene-QYE76_007305 ... gene-QYE76_007310, gene-QYE76_007810, gene-QYE76_008963, gene-QYE76_008968, gene-QYE76_008973, gene-QYE76_008975, gene-QYE76_008976, gene-QYE76_008987, gene-QYE76_009002, gene-QYE76_009034, gene-QYE76_009092, gene-QYE76_009093, gene-QYE76_009095, gene-QYE76_009097, gene-QYE76_009104, gene-QYE76_009109, gene-QYE76_009113, gene-QYE76_009326, gene-QYE76_009336, gene-QYE76_009348, gene-QYE76_009351, gene-QYE76_014117, gene-QYE76_016763, gene-QYE76_016764, gene-QYE76_016765, gene-QYE76_017955, gene-QYE76_020091, gene-QYE76_020092, gene-QYE76_020093, gene-QYE76_020094, gene-QYE76_020095, gene-QYE76_020096, gene-QYE76_020102, gene-QYE76_020114, gene-QYE76_020337, gene-QYE76_025544, gene-QYE76_043413, gene-QYE76_053818, gene-QYE76_057962, gene-QYE76_061904, gene-QYE76_063993, gene-QYE76_063995
Poaceae	Oryza coarctata	12	Oco01G006140, Oco02G006190, Oco04G003180, Oco07G003250 ... Oco07G003300, Oco08G003580, Oco16G000440, Oco19G007000, Oco19G007200, Oco19G007340, Oco20G007160, Oco20G007250
Poaceae	Oryza sativa	14	LOC_Os04g28234.2, LOC_Os04g28300.1, LOC_Os08g01640.1 ... LOC_Os08g01650.1, LOC_Os08g01870.1, LOC_Os08g15000.1, LOC_Os10g35090.1, LOC_Os10g35230.1, LOC_Os10g35240.1, LOC_Os10g35260.1, LOC_Os10g35436.1, LOC_Os10g35440.1, LOC_Os10g35640.1, LOC_Os10g35650.1
Poaceae	Paspalum vaginatum	17	gene-BS78_01G189400, gene-BS78_05G011700 ... gene-BS78_05G029200, gene-BS78_05G034100, gene-BS78_05G034200, gene-BS78_05G037400, gene-BS78_05G045700, gene-BS78_05G045800, gene-BS78_05G046300, gene-BS78_05G046500, gene-BS78_05G046600, gene-BS78_05G046900, gene-BS78_05G047400, gene-BS78_05G184700, gene-BS78_05G185100, gene-BS78_05G185600, gene-BS78_06G061400
Poaceae	Puccinellia tenuiflora	2	Pt_Chr0500284, Pt_Chr0500285
Poaceae	Sporobolus alterniflorus	22	Chr06G030060, Chr09G000530, Chr09G000870, Chr09G001200 ... Chr09G001810, Chr0G029500, Chr13G022300, Chr18G000360, Chr22G014480, Chr23G016880, Chr24G001020, Chr24G001150, Chr24G001180, Chr24G015790, Chr25G013150, Chr25G013160, Chr25G013190, Chr25G013350, Chr28G001210, Chr30G012910, Chr30G012960, Chr30G013230
Poaceae	Thinopyrum elongatum	20	Tel1E01G069500, Tel1E01G115200, Tel1E01G115500 ... Tel1E01G115600, Tel1E01G116200, Tel1E01G118600, Tel1E01G119100, Tel1E01G119500, Tel1E01G136600, Tel1E01G136800, Tel1E01G138200, Tel1E01G138700, Tel1E01G139300, Tel1E01G139400, Tel1E01G139700, Tel1E01G152600, Tel2E01G903700, Tel2E01G904000, Tel6E01G188300, Tel6E01G556900
Poaceae	Triticum dicoccoides	49	gene_TRIDC1AG003330, gene_TRIDC1AG003340 ... gene_TRIDC1AG007580, gene_TRIDC1AG007610, gene_TRIDC1AG007780, gene_TRIDC1AG009300, gene_TRIDC1AG010140, gene_TRIDC1AG010250, gene_TRIDC1AG010270, gene_TRIDC1BG004200, gene_TRIDC1BG004230, gene_TRIDC1BG009450, gene_TRIDC1BG009460, gene_TRIDC1BG009470, gene_TRIDC1BG009590, gene_TRIDC1BG009630, gene_TRIDC1BG009650, gene_TRIDC1BG009670, gene_TRIDC1BG009890, gene_TRIDC1BG011380, gene_TRIDC1BG011500, gene_TRIDC1BG011510, gene_TRIDC1BG013060, gene_TRIDC1BG051260, gene_TRIDC2AG073710, gene_TRIDC2AG074240, gene_TRIDC2AG074270, gene_TRIDC2AG074350, gene_TRIDC2BG016010, gene_TRIDC2BG080930, gene_TRIDC2BG080970, gene_TRIDC2BG081010, gene_TRIDC5BG041750, gene_TRIDC6AG001570, gene_TRIDC6AG001580, gene_TRIDC6AG010130, gene_TRIDC6AG012860, gene_TRIDC6AG012880, gene_TRIDC6AG012890, gene_TRIDC6AG013070, gene_TRIDC6AG046880, gene_TRIDC6BG002190, gene_TRIDC6BG002200, gene_TRIDC6BG002210, gene_TRIDC6BG005590, gene_TRIDC6BG017940, gene_TRIDC6BG018300, gene_TRIDC6BG018310, gene_TRIDC6BG054690
Poaceae	Triticum aestivum	126	TraesCS1A02G031600.1.cds1, TraesCS1A02G031700.1.cds1 ... TraesCS1A02G054500.1, TraesCS1A02G054700.1.cds1, TraesCS1A02G054800.1.cds1, TraesCS1A02G055500.1.cds1, TraesCS1A02G055800.1, TraesCS1A02G056000.1.cds1, TraesCS1A02G056105.1, TraesCS1A02G057300.1, TraesCS1A02G057400.1, TraesCS1A02G066600.1.cds1, TraesCS1A02G067400.1.cds1, TraesCS1A02G067600.1.cds1, TraesCS1A02G067700.1.cds1, TraesCS1A02G072982.1.cds1, TraesCS1A02G073600.1.cds1, TraesCS1A02G073800.1.cds1, TraesCS1B02G038200.1.cds1, TraesCS1B02G038300.1.cds1, TraesCS1B02G038400.1.cds1, TraesCS1B02G038500.1.cds1, TraesCS1B02G039100.1.cds1, TraesCS1B02G039200.1.cds1, TraesCS1B02G039620.1, TraesCS1B02G039700.1.cds1, TraesCS1B02G071600.1, TraesCS1B02G071617.1.cds1, TraesCS1B02G071642.1, TraesCS1B02G072300.1.cds1, TraesCS1B02G072400.1.cds1, TraesCS1B02G072700.1.cds1, TraesCS1B02G072900.1.cds1, TraesCS1B02G074600.1.cds1, TraesCS1B02G075000.1.cds1, TraesCS1B02G084563.1.cds1, TraesCS1B02G085900.1.cds1, TraesCS1B02G086000.1, TraesCS1B02G092500.1.cds1, TraesCS1B02G092600.1.cds1, TraesCS1B02G315437.1.cds1, TraesCS1B02G315500.1.cds1, TraesCS1D02G032300.1.cds1, TraesCS1D02G033000.1.cds1, TraesCS1D02G033100.1.cds1, TraesCS1D02G033205.1.cds1, TraesCS1D02G055300.1.cds1, TraesCS1D02G055500.1, TraesCS1D02G056200.1.cds1, TraesCS1D02G056400.1.cds1, TraesCS1D02G056600.1, TraesCS1D02G057800.1.cds1, TraesCS1D02G058000.1.cds1, TraesCS1D02G058200.1.cds1, TraesCS1D02G058517.1.cds1, TraesCS1D02G067980.1, TraesCS1D02G068400.1.cds1, TraesCS1D02G068500.1.cds1, TraesCS1D02G068600.1.cds1, TraesCS1D02G068800.1.cds1, TraesCS1D02G068900.1.cds1, TraesCS1D02G069100.1, TraesCS1D02G075800.1.cds1, TraesCS1D02G076500.1.cds1, TraesCS1D02G076800.1.cds1, TraesCS1D02G076900.1, TraesCS1D02G095200.1, TraesCS2A02G478045.1.cds1, TraesCS2A02G526200.1.cds1, TraesCS2A02G530300.1, TraesCS2A02G530600.1.cds1, TraesCS2A02G530700.1.cds1, TraesCS2B02G126905.1.cds1, TraesCS2B02G560000.1.cds1, TraesCS2B02G560700.1.cds1, TraesCS2B02G560741.1.cds1, TraesCS2D02G477278.1.cds1, TraesCS2D02G532100.1.cds1, TraesCS2D02G532182.1.cds1, TraesCS2D02G532300.1.cds1, TraesCS2D02G532600.1.cds1, TraesCS5B02G250800.1.cds1, TraesCS6A02G014500.1.cds1, TraesCS6A02G014800.1.cds1, TraesCS6A02G015000.1.cds1, TraesCS6A02G015958.1.cds1, TraesCS6A02G099300.1.cds1, TraesCS6A02G099318.1.cds1, TraesCS6A02G099389.1.cds1, TraesCS6A02G099407.1, TraesCS6A02G101100.1.cds1, TraesCS6A02G311600.1.cds1, TraesCS6B02G021200.1.cds1, TraesCS6B02G021500.1.cds1, TraesCS6B02G021600.1.cds1, TraesCS6B02G021641.1.cds1, TraesCS6B02G045200.1.cds1, TraesCS6B02G114312.1.cds1, TraesCS6B02G127200.1.cds1, TraesCS6B02G127400.1.cds1, TraesCS6B02G127457.1.cds1, TraesCS6B02G127500.1.cds1, TraesCS6B02G127557.1.cds1, TraesCS6B02G129100.1, TraesCS6B02G129173.1.cds1, TraesCS6B02G129200.1.cds1, TraesCS6B02G341800.1.cds1, TraesCS6D02G018941.1, TraesCS6D02G047700.1.cds1, TraesCS6D02G076500.1, TraesCS6D02G083100.1.cds1, TraesCS6D02G083112.1.cds1, TraesCS6D02G083130.1.cds1, TraesCS6D02G083300.1.cds1, TraesCS6D02G083400.1.cds1, TraesCS6D02G089400.1.cds1, TraesCS6D02G089500.1, TraesCS6D02G089608.1.cds1, TraesCS6D02G290900.1.cds1, TraesCS7B02G469500.1.cds1, TraesCS7D02G231400.1.cds1, TraesCS7D02G487500.1.cds1, TraesCSU02G089563.1.cds1, TraesCSU02G089700.1.cds1, TraesCSU02G089705.1.cds1, TraesCSU02G090200.1.cds1
Poaceae	Zea mays	9	Zm00001eb065260_P001, Zm00001eb114490_P001 ... Zm00001eb114520_P001, Zm00001eb114600_P001, Zm00001eb114660_P001, Zm00001eb114690_P001, Zm00001eb301710_P001, Zm00001eb345130_P002, Zm00001eb345170_P001
Poaceae	Zoysia japonica	5	nbis-gene-34357, nbis-gene-43947, nbis-gene-49110 ... nbis-gene-7954, nbis-gene-7966
Poaceae	Zoysia macrostachya	7	Zma_g15222, Zma_g15496, Zma_g19491, Zma_g19493, Zma_g19497 ... Zma_g19498, Zma_g21114
Posidoniaceae	Posidonia oceanica	4	gene.Posoc02g30250, gene.Posoc02g34610, gene.Posoc07g00710 ... gene.Posoc07g00950
Salicaceae	Populus euphratica	1	populus_peu19919
Zosteraceae	Zostera marina	4	Zosma02g14330.v3.1, Zosma04g09020.v3.1, Zosma05g28260.v3.1 ... Zosma06g26890.v3.1