HalophFGD

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Basic Information
Locus ID: Tel1E01G099300
Species & Taxonomic ID: Thinopyrum elongatum & 4588
Genome Assembly: GWHABKY00000000
Description: DNA recombination
Maps and Mapping Data
Chromosome Start End Strand ID
chr1 57253575 57255996 - Tel1E01G099300
Protein Data
Protein Properties:
Theoretical pI Molecular Weight Instability Index Aliphatic Index GRAVY
5.46 12,040.84 Da 57.04 90.28 0.10
Protein Domain:
Category ID Description Start End Evalue/Score InterPro ID
KEGG Pathway
KO Term:
K07466 (replication factor A1)
Pathway:
ko03030 (DNA replication) map03030 (DNA replication) ko03420 (Nucleotide excision repair) map03420 (Nucleotide excision repair) ko03430 (Mismatch repair) map03430 (Mismatch repair) ko03440 (Homologous recombination) map03440 (Homologous recombination) ko03460 (Fanconi anemia pathway) map03460 (Fanconi anemia pathway)
Best hit
Source Best Hit ID Description E-value
RefSeq XP_044457404.1 uncharacterized protein LOC123189130 [Triticum aestivum] 0
TrEMBL M8AWG9 Uncharacterized protein OS=Aegilops tauschii OX=37682 PE=4 SV=1 0
Expression
First Prev Next Last
BioProject Accession TPM Cultivar Tissue Development Stage Sample Name Description
No sample metadata found.
Network

No network data available for this species.

Orthology
Family Species Count Orthologous Genes
Poaceae Echinochloa crus-galli 2 BH01.1546, BH02.1349
Poaceae Hordeum vulgare 1 HORVU.MOREX.r3.3HG0245280.1
Poaceae Thinopyrum elongatum 34 Tel1E01G099300, Tel1E01G144300, Tel1E01G372700 ...
Tel1E01G416300, Tel2E01G069100, Tel2E01G072400, Tel2E01G077200, Tel2E01G277000, Tel2E01G407500, Tel2E01G452200, Tel2E01G545900, Tel2E01G657600, Tel2E01G793900, Tel3E01G107600, Tel3E01G188500, Tel3E01G687100, Tel3E01G889100, Tel4E01G018700, Tel5E01G025400, Tel5E01G184700, Tel5E01G478800, Tel5E01G489300, Tel6E01G074300, Tel6E01G132200, Tel6E01G298000, Tel6E01G517400, Tel6E01G630900, Tel6E01G659700, Tel6E01G719100, Tel6E01G732000, Tel7E01G1004300, Tel7E01G268400, Tel7E01G382000, Tel7E01G572400
Poaceae Triticum dicoccoides 10 gene_TRIDC1AG019590, gene_TRIDC1AG026440 ...
gene_TRIDC1BG003010, gene_TRIDC3AG018380, gene_TRIDC4AG012810, gene_TRIDC5AG072190, gene_TRIDC5BG024690, gene_TRIDC6AG012730, gene_TRIDC7AG040710, gene_TRIDC7BG001160
Poaceae Triticum aestivum 31 TraesCS1A02G172200.1, TraesCS1A02G173300.1 ...
TraesCS1B02G100500.1, TraesCS2A02G107400.1, TraesCS2D02G239400.1.cds1, TraesCS2D02G420300.1, TraesCS3B02G398700.1, TraesCS3D02G342300.1.cds1, TraesCS3D02G442900.1, TraesCS4A02G094200.1, TraesCS4A02G097600.1, TraesCS4A02G144200.1.cds1, TraesCS5B02G093800.1, TraesCS5B02G138000.1.cds1, TraesCS5B02G369000.1.cds1, TraesCS5D02G085400.1, TraesCS5D02G191700.1.cds1, TraesCS5D02G194200.1, TraesCS5D02G438700.1, TraesCS6A02G106700.1, TraesCS6A02G384500.1.cds1, TraesCS6B02G203500.1.cds1, TraesCS6B02G219900.1, TraesCS6D02G059800.1.cds1, TraesCS6D02G110200.1.cds1, TraesCS7A02G158700.1, TraesCS7A02G230400.1.cds1, TraesCS7A02G300600.1, TraesCS7B02G248900.1, TraesCSU02G048900.2, TraesCSU02G063300.1.cds1
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