Basic Information
Locus ID:
TC12G2151
Species & Taxonomic ID:
Tamarix chinensis & 189791
Genome Assembly:
GCA_030549775.1
Description:
high mobility group
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr12 | 76448517 | 76451741 | - | TC12G2151 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.92 | 56,865.29 Da | 52.09 | 71.22 | -0.49 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd01390 | HMGB-UBF_HMG-box | 313 | 377 | 6.23895E-21 | - |
| CDD | cd16872 | ARID_HMGB9-like | 69 | 154 | 1.58419E-48 | - |
| Pfam | PF01388 | ARID/BRIGHT DNA binding domain | 72 | 154 | 5.9E-17 | IPR001606 |
| Pfam | PF00505 | HMG (high mobility group) box | 313 | 380 | 1.0E-13 | IPR009071 |
| SUPERFAMILY | SSF47095 | HMG-box | 310 | 382 | 2.23E-20 | IPR036910 |
| SUPERFAMILY | SSF46774 | ARID-like | 65 | 167 | 9.42E-29 | IPR036431 |
| Gene3D | G3DSA:1.10.150.60 | - | 53 | 164 | 2.2E-25 | IPR036431 |
| Gene3D | G3DSA:1.10.30.10 | High mobility group box domain | 295 | 391 | 3.4E-20 | IPR036910 |
| SMART | SM00398 | hmgende2 | 312 | 381 | 1.3E-17 | IPR009071 |
| SMART | SM00501 | bright_3 | 68 | 159 | 5.6E-26 | IPR001606 |
| SMART | SM01014 | ARID_2 | 64 | 154 | 4.6E-27 | - |
| ProSiteProfiles | PS51011 | ARID domain profile. | 67 | 158 | 24.683519 | IPR001606 |
| ProSiteProfiles | PS50118 | HMG boxes A and B DNA-binding domains profile. | 313 | 380 | 14.833306 | IPR009071 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 430 | 446 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 276 | 292 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 196 | 215 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 411 | 461 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 411 | 426 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 293 | 307 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 276 | 319 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 196 | 223 | - | - |
| Coils | Coil | Coil | 362 | 382 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G04880.1 | HMG (high mobility group) box protein with ARID/BRIGHT DNA-binding domain. | 0 |
| RefSeq | XP_034686846.1 | high mobility group B protein 15 isoform X1 [Vitis riparia] | 0 |
| Q9MAT6 | High mobility group B protein 15 OS=Arabidopsis thaliana OX=3702 GN=HMGB15 PE=2 SV=1 | 0 | |
| TrEMBL | A5BNN4 | High mobility group B protein 15-like OS=Vitis vinifera OX=29760 GN=VITISV_021289 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology