Basic Information
Locus ID:
TC12G2018
Species & Taxonomic ID:
Tamarix chinensis & 189791
Genome Assembly:
GCA_030549775.1
Description:
C4-type zinc-finger of DNA polymerase delta
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr12 | 72770965 | 72783232 | + | TC12G2018 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.49 | 89,788.43 Da | 55.33 | 57.52 | -0.97 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00641 | Zn-finger in Ran binding protein and others | 404 | 431 | 3.3E-6 | IPR001876 |
| Pfam | PF00641 | Zn-finger in Ran binding protein and others | 370 | 398 | 4.5E-10 | IPR001876 |
| SUPERFAMILY | SSF90209 | Ran binding protein zinc finger-like | 363 | 400 | 2.24E-7 | IPR036443 |
| Gene3D | G3DSA:4.10.1060.10 | - | 363 | 400 | 4.7E-16 | - |
| Gene3D | G3DSA:4.10.1060.10 | - | 401 | 433 | 4.1E-8 | - |
| SMART | SM00547 | zf_4 | 372 | 396 | 3.0E-6 | IPR001876 |
| SMART | SM00547 | zf_4 | 405 | 429 | 4.9E-4 | IPR001876 |
| ProSiteProfiles | PS50199 | Zinc finger RanBP2 type profile. | 370 | 399 | 10.263121 | IPR001876 |
| ProSiteProfiles | PS50199 | Zinc finger RanBP2 type profile. | 403 | 432 | 9.517836 | IPR001876 |
| ProSitePatterns | PS01358 | Zinc finger RanBP2-type signature. | 374 | 393 | - | IPR001876 |
| ProSitePatterns | PS01358 | Zinc finger RanBP2-type signature. | 407 | 426 | - | IPR001876 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 343 | 362 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 95 | 125 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 643 | 675 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 726 | 741 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 772 | 788 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 713 | 788 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 549 | 569 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 488 | 520 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 341 | 362 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 745 | 771 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 106 | 125 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 547 | 596 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 626 | 641 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 618 | 675 | - | - |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G55040.1 | zinc finger (Ran-binding) family protein. | 0 |
| RefSeq | XP_010674734.3 | uncharacterized protein LOC104890827 [Beta vulgaris subsp. vulgaris] | 0 |
| Q8S9K3 | Zinc finger protein VAR3, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=VAR3 PE=1 SV=2 | 0 | |
| TrEMBL | A0A5J5BTS4 | RanBP2-type domain-containing protein OS=Nyssa sinensis OX=561372 GN=F0562_019979 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology