Basic Information
Locus ID:
TC12G1785
Species & Taxonomic ID:
Tamarix chinensis & 189791
Genome Assembly:
GCA_030549775.1
Description:
Kelch motif
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr12 | 66409665 | 66411191 | - | TC12G1785 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.54 | 56,452.66 Da | 49.58 | 65.06 | -0.55 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00646 | F-box domain | 31 | 73 | 5.0E-4 | IPR001810 |
| Pfam | PF01344 | Kelch motif | 237 | 282 | 8.0E-12 | IPR006652 |
| SUPERFAMILY | SSF81383 | F-box domain | 26 | 70 | 1.44E-6 | IPR036047 |
| SUPERFAMILY | SSF117281 | Kelch motif | 148 | 437 | 7.19E-38 | IPR015915 |
| Gene3D | G3DSA:1.20.1280.50 | - | 28 | 82 | 3.1E-5 | - |
| Gene3D | G3DSA:2.120.10.80 | - | 149 | 450 | 1.2E-35 | IPR015915 |
| SMART | SM00612 | kelc_smart | 249 | 296 | 1.1E-7 | IPR006652 |
| SMART | SM00612 | kelc_smart | 199 | 247 | 0.016 | IPR006652 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 115 | 138 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 9 | 28 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 115 | 140 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 10 | 25 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G59940.1 | Galactose oxidase/kelch repeat superfamily protein. | 0 |
| RefSeq | XP_042945091.1 | F-box/kelch-repeat protein SKIP20-like [Carya illinoinensis] | 0 |
| Q9M1Y1 | F-box/kelch-repeat protein SKIP20 OS=Arabidopsis thaliana OX=3702 GN=SKIP20 PE=1 SV=1 | 0 | |
| TrEMBL | A0A2I4DXB7 | F-box/kelch-repeat protein SKIP20-like OS=Juglans regia OX=51240 GN=LOC108984319 PE=4 SV=2 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology