Basic Information
Locus ID:
TC12G1724
Species & Taxonomic ID:
Tamarix chinensis & 189791
Genome Assembly:
GCA_030549775.1
Description:
DEAD-box ATP-dependent RNA helicase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr12 | 64451106 | 64452419 | - | TC12G1724 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.56 | 44,955.65 Da | 61.62 | 48.81 | -0.98 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00201 | WW | 23 | 52 | 1.5203E-4 | IPR001202 |
| Pfam | PF00397 | WW domain | 22 | 52 | 3.5E-7 | IPR001202 |
| SUPERFAMILY | SSF51045 | WW domain | 14 | 53 | 1.44E-8 | IPR036020 |
| Gene3D | G3DSA:2.20.70.10 | - | 17 | 62 | 6.3E-6 | - |
| SMART | SM00456 | ww_5 | 21 | 54 | 1.4E-7 | IPR001202 |
| ProSiteProfiles | PS50020 | WW/rsp5/WWP domain profile. | 20 | 54 | 11.3687 | IPR001202 |
| ProSitePatterns | PS01159 | WW/rsp5/WWP domain signature. | 26 | 52 | - | IPR001202 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 219 | 253 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 27 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 185 | 204 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 62 | 95 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 219 | 256 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 71 | 95 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G06480.2 | - | 0 |
| RefSeq | XP_019253481.1 | PREDICTED: DEAD-box ATP-dependent RNA helicase 40-like [Nicotiana attenuata] | 0 |
| Q9SQV1 | DEAD-box ATP-dependent RNA helicase 40 OS=Arabidopsis thaliana OX=3702 GN=RH40 PE=2 SV=1 | 0 | |
| TrEMBL | A0A1J6IIM4 | Dead-box atp-dependent rna helicase 40 OS=Nicotiana attenuata OX=49451 GN=RH40 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology