Basic Information
Locus ID:
TC12G1643
Species & Taxonomic ID:
Tamarix chinensis & 189791
Genome Assembly:
GCA_030549775.1
Description:
LRR receptor-like serine threonine-protein kinase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr12 | 62165209 | 62167743 | - | TC12G1643 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.09 | 84,170.87 Da | 40.68 | 105.24 | 0.05 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF13855 | Leucine rich repeat | 466 | 525 | 9.3E-7 | IPR001611 |
| Pfam | PF13855 | Leucine rich repeat | 628 | 669 | 3.6E-8 | IPR001611 |
| Pfam | PF13855 | Leucine rich repeat | 206 | 264 | 7.2E-10 | IPR001611 |
| Pfam | PF13516 | Leucine Rich repeat | 132 | 147 | 0.43 | IPR001611 |
| Pfam | PF08263 | Leucine rich repeat N-terminal domain | 31 | 72 | 9.4E-9 | IPR013210 |
| SUPERFAMILY | SSF52058 | L domain-like | 325 | 675 | 3.3E-50 | - |
| SUPERFAMILY | SSF52058 | L domain-like | 26 | 321 | 5.78E-53 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 582 | 698 | 9.4E-37 | IPR032675 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 78 | 268 | 2.7E-50 | IPR032675 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 23 | 77 | 6.5E-6 | IPR032675 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 444 | 540 | 1.8E-24 | IPR032675 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 269 | 443 | 1.5E-43 | IPR032675 |
| SMART | SM00365 | LRR_sd22_2 | 131 | 154 | 3.5 | - |
| SMART | SM00369 | LRR_typ_2 | 632 | 655 | 22.0 | IPR003591 |
| SMART | SM00365 | LRR_sd22_2 | 464 | 493 | 200.0 | - |
| SMART | SM00365 | LRR_sd22_2 | 632 | 647 | 370.0 | - |
| SMART | SM00365 | LRR_sd22_2 | 203 | 229 | 15.0 | - |
| SMART | SM00369 | LRR_typ_2 | 131 | 155 | 58.0 | IPR003591 |
| SMART | SM00365 | LRR_sd22_2 | 179 | 194 | 680.0 | - |
| SMART | SM00369 | LRR_typ_2 | 464 | 487 | 77.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 179 | 203 | 320.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 227 | 251 | 14.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 321 | 347 | 350.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 656 | 679 | 100.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 488 | 512 | 33.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 608 | 631 | 300.0 | IPR003591 |
| ProSiteProfiles | PS51450 | Leucine-rich repeat profile. | 658 | 680 | 7.373124 | IPR001611 |
| PRINTS | PR00019 | Leucine-rich repeat signature | 635 | 648 | 7.2E-6 | - |
| PRINTS | PR00019 | Leucine-rich repeat signature | 656 | 669 | 7.2E-6 | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G04220.1 | receptor like protein 46. | 0 |
| RefSeq | XP_020423333.1 | LRR receptor-like serine/threonine-protein kinase GSO1 [Prunus persica] | 0 |
| F4JGB6 | Receptor-like protein 46 OS=Arabidopsis thaliana OX=3702 GN=RLP46 PE=3 SV=1 | 0 | |
| TrEMBL | A0A314XES7 | LRR receptor-like serine/threonine-protein kinase GSO1 OS=Prunus yedoensis var. nudiflora OX=2094558 GN=Pyn_39791 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_18890 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah021381 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_3g056200 |
| Amaranthaceae | Chenopodium album | 1 | gene:ENSEOMG00000032386 |
| Amaranthaceae | Chenopodium quinoa | 1 | CQ.Regalona.r1.3BG0017740 |
| Anacardiaceae | Pistacia vera | 6 | pistato.v30085600, pistato.v30085610, pistato.v30085720 ... |
| Apiaceae | Apium graveolens | 5 | Ag1G01409, Ag1G01533, Ag1G01534, Ag3G00393, Ag9G01364 |
| Arecaceae | Cocos nucifera | 1 | scaffold001583G000020 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103718375 |
| Asteraceae | Flaveria trinervia | 2 | Ftri16G03062, Ftri16G18592 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT4G04220.1 |
| Brassicaceae | Eutrema salsugineum | 2 | Thhalv10027707m.g.v1.0, Thhalv10027711m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp3g02900.v2.2 |
| Brassicaceae | Brassica nigra | 3 | BniB04g018820.2N, BniB04g018840.2N, BniB07g033940.2N |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG07.2115, evm.TU.LG15.1016 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_8_RagTag.19 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-10341 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-20621 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-17663 |
| Rhizophoraceae | Kandelia candel | 1 | add.evm.TU.utg000018l.391 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00002965 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-24363 |
| Salicaceae | Populus euphratica | 1 | populus_peu04482 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132607114 |
| Tamaricaceae | Reaumuria soongarica | 1 | gene_8519 |
| Tamaricaceae | Tamarix chinensis | 1 | TC12G1643 |