Basic Information
Locus ID:
TC12G1592
Species & Taxonomic ID:
Tamarix chinensis & 189791
Genome Assembly:
GCA_030549775.1
Description:
RING finger and CHY zinc finger domain-containing protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr12 | 60817425 | 60829531 | + | TC12G1592 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.45 | 36,826.64 Da | 61.56 | 79.24 | -0.06 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF13639 | Ring finger domain | 203 | 246 | 3.8E-7 | IPR001841 |
| Pfam | PF05495 | CHY zinc finger | 23 | 103 | 9.9E-21 | IPR008913 |
| Pfam | PF14599 | Zinc-ribbon | 251 | 309 | 5.9E-27 | IPR039512 |
| SUPERFAMILY | SSF57850 | RING/U-box | 202 | 254 | 1.84E-10 | - |
| SUPERFAMILY | SSF161219 | CHY zinc finger-like | 20 | 92 | 2.09E-17 | IPR037274 |
| Gene3D | G3DSA:2.20.28.10 | - | 278 | 313 | 5.7E-17 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 192 | 277 | 3.7E-11 | IPR013083 |
| SMART | SM00184 | ring_2 | 204 | 246 | 2.9E-6 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 204 | 247 | 11.722122 | IPR001841 |
| ProSiteProfiles | PS51266 | Zinc finger CHY-type profile. | 16 | 91 | 25.963966 | IPR008913 |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G18650.1 | CHY-type/CTCHY-type/RING-type Zinc finger protein. | 0 |
| RefSeq | XP_048440569.1 | E3 ubiquitin-protein ligase MIEL1 [Pyrus x bretschneideri] | 0 |
| Q8VZK0 | E3 ubiquitin-protein ligase MIEL1 OS=Arabidopsis thaliana OX=3702 GN=MIEL1 PE=1 SV=1 | 0 | |
| TrEMBL | A0A6J5VW84 | E3 ubiquitin-protein ligase MIEL1-like OS=Prunus armeniaca OX=36596 GN=CURHAP_LOCUS2171 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology