Basic Information
Locus ID:
TC12G1542
Species & Taxonomic ID:
Tamarix chinensis & 189791
Genome Assembly:
GCA_030549775.1
Description:
isoform X1
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr12 | 59270257 | 59282162 | + | TC12G1542 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.87 | 46,790.03 Da | 62.28 | 87.44 | -0.05 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16495 | RING_CH-C4HC3_MARCH | 218 | 265 | 3.26918E-12 | - |
| Pfam | PF12906 | RING-variant domain | 218 | 264 | 2.1E-12 | IPR011016 |
| SUPERFAMILY | SSF57850 | RING/U-box | 214 | 268 | 2.16E-12 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 202 | 272 | 9.4E-16 | IPR013083 |
| SMART | SM00744 | ringv_2 | 217 | 265 | 1.1E-17 | IPR011016 |
| ProSiteProfiles | PS51292 | Zinc finger RING-CH-type profile. | 210 | 271 | 21.180197 | IPR011016 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 134 | 154 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 73 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 186 | 208 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 134 | 161 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 16 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 53 | 73 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G06330.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_040995863.1 | uncharacterized protein LOC121242035 isoform X2 [Juglans microcarpa x Juglans regia] | 0 |
| TrEMBL | A0A8T1RLI2 | RING-CH-type domain-containing protein OS=Carya illinoinensis OX=32201 GN=CIPAW_01G154800 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology