Basic Information
Locus ID:
TC12G1457
Species & Taxonomic ID:
Tamarix chinensis & 189791
Genome Assembly:
GCA_030549775.1
Description:
E3 ubiquitin-protein ligase LUL4
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr12 | 57205462 | 57212919 | + | TC12G1457 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.88 | 44,037.13 Da | 64.26 | 64.62 | -0.60 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16789 | mRING-HC-C3HC5_MGRN1_like---blasttree | 330 | 370 | 1.50413E-25 | - |
| Pfam | PF13920 | Zinc finger, C3HC4 type (RING finger) | 329 | 375 | 2.3E-17 | - |
| SUPERFAMILY | SSF57850 | RING/U-box | 325 | 378 | 6.06E-14 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 313 | 379 | 6.6E-18 | IPR013083 |
| SMART | SM00184 | ring_2 | 331 | 369 | 4.4E-4 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 331 | 370 | 11.633604 | IPR001841 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 37 | 58 | - | - |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G06140.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_034686284.1 | probable E3 ubiquitin-protein ligase LUL4 [Vitis riparia] | 0 |
| Q8LA32 | Probable E3 ubiquitin-protein ligase LUL4 OS=Arabidopsis thaliana OX=3702 GN=LUL4 PE=2 SV=1 | 0 | |
| TrEMBL | A0A6J1AUP8 | RING-type E3 ubiquitin transferase OS=Herrania umbratica OX=108875 GN=LOC110421040 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology