Basic Information
Locus ID:
TC12G1437
Species & Taxonomic ID:
Tamarix chinensis & 189791
Genome Assembly:
GCA_030549775.1
Description:
Retrotransposon gag protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr12 | 56712661 | 56713059 | + | TC12G1437 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.66 | 14,727.30 Da | 60.41 | 53.26 | -0.84 |
Protein Domain:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| RefSeq | XP_020080220.1 | uncharacterized protein LOC109703897 [Ananas comosus] | 0 |
| TrEMBL | A0A6P5EFD5 | uncharacterized protein LOC109703897 OS=Ananas comosus OX=4615 GN=LOC109703897 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Amaranthaceae | Salicornia bigelovii | 38 | Sbi_jg11007, Sbi_jg11359, Sbi_jg11360, Sbi_jg13582 ... |
| Amaranthaceae | Salicornia europaea | 2 | Seu_jg15426, Seu_jg18148 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno02g06310 |
| Rhizophoraceae | Bruguiera sexangula | 2 | evm.TU.Scaffold_16_RagTag.678, evm.TU.Scaffold_3_RagTag.1025 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-21800 |
| Tamaricaceae | Tamarix chinensis | 1 | TC12G1437 |