Basic Information
Locus ID:
TC12G1376
Species & Taxonomic ID:
Tamarix chinensis & 189791
Genome Assembly:
GCA_030549775.1
Description:
TPL-binding domain in jasmonate signalling
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr12 | 54960495 | 54971287 | - | TC12G1376 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.21 | 156,720.92 Da | 46.76 | 68.19 | -0.70 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd15532 | PHD2_CHD_II | 711 | 750 | 1.76118E-19 | - |
| Pfam | PF16135 | Tify domain binding domain | 633 | 683 | 1.1E-17 | IPR032308 |
| Pfam | PF00628 | PHD-finger | 711 | 753 | 2.1E-7 | IPR019787 |
| SUPERFAMILY | SSF57903 | FYVE/PHD zinc finger | 701 | 756 | 1.86E-13 | IPR011011 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 699 | 802 | 1.7E-20 | IPR013083 |
| SMART | SM00249 | PHD_3 | 710 | 751 | 3.2E-12 | IPR001965 |
| SMART | SM00249 | PHD_3 | 752 | 810 | 2.0 | IPR001965 |
| ProSiteProfiles | PS50016 | Zinc finger PHD-type profile. | 708 | 753 | 10.175301 | IPR019787 |
| ProSitePatterns | PS01359 | Zinc finger PHD-type signature. | 711 | 750 | - | IPR019786 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 539 | 562 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 533 | 562 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 294 | 388 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 468 | 512 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1198 | 1277 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 493 | 512 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1262 | 1277 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 165 | 214 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1209 | 1224 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 179 | 198 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1228 | 1254 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 473 | 492 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 199 | 214 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1143 | 1167 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1094 | 1111 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1137 | 1177 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 321 | 357 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1094 | 1115 | - | - |
| Coils | Coil | Coil | 470 | 504 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G05380.1 | Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger protein. | 0 |
| RefSeq | XP_021717015.1 | uncharacterized protein LOC110684883 isoform X1 [Chenopodium quinoa] | 0 |
| F4IXE7 | Increased DNA methylation 1 OS=Arabidopsis thaliana OX=3702 GN=IDM1 PE=1 SV=1 | 0 | |
| TrEMBL | A0A0K9RA74 | PHD-type domain-containing protein OS=Spinacia oleracea OX=3562 GN=SOVF_089350 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology