Basic Information
Locus ID:
TC12G1188
Species & Taxonomic ID:
Tamarix chinensis & 189791
Genome Assembly:
GCA_030549775.1
Description:
Pentatricopeptide repeat-containing protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr12 | 50261508 | 50263031 | + | TC12G1188 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.36 | 57,338.70 Da | 41.68 | 78.64 | -0.49 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF14432 | DYW family of nucleic acid deaminases | 401 | 497 | 1.6E-32 | IPR032867 |
| Pfam | PF13041 | PPR repeat family | 234 | 278 | 2.3E-7 | IPR002885 |
| Pfam | PF01535 | PPR repeat | 204 | 231 | 5.1E-4 | IPR002885 |
| Gene3D | G3DSA:1.25.40.10 | Tetratricopeptide repeat domain | 249 | 362 | 5.5E-18 | IPR011990 |
| Gene3D | G3DSA:1.25.40.10 | Tetratricopeptide repeat domain | 140 | 233 | 1.2E-7 | IPR011990 |
| TIGRFAM | TIGR00756 | PPR: pentatricopeptide repeat domain | 204 | 231 | 1.1E-5 | IPR002885 |
| TIGRFAM | TIGR00756 | PPR: pentatricopeptide repeat domain | 234 | 267 | 3.9E-5 | IPR002885 |
| ProSiteProfiles | PS51375 | Pentatricopeptide (PPR) repeat profile. | 200 | 234 | 10.709248 | IPR002885 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 87 | 111 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 59 | 115 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G15690.1 | Tetratricopeptide repeat (TPR)-like superfamily protein. | 0 |
| RefSeq | XP_002279824.1 | PREDICTED: pentatricopeptide repeat-containing protein At2g15690-like [Vitis vinifera] | 0 |
| Q9ZQE5 | Pentatricopeptide repeat-containing protein At2g15690, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=PCMP-H66 PE=1 SV=2 | 0 | |
| TrEMBL | A0A5B7BAV5 | DYW_deaminase domain-containing protein (Fragment) OS=Davidia involucrata OX=16924 GN=Din_034302 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology