Basic Information
Locus ID:
TC12G1159
Species & Taxonomic ID:
Tamarix chinensis & 189791
Genome Assembly:
GCA_030549775.1
Description:
Belongs to the RecA family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr12 | 49504246 | 49509794 | + | TC12G1159 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.08 | 47,470.82 Da | 38.90 | 93.95 | -0.09 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00154 | recA bacterial DNA recombination protein | 264 | 342 | 1.8E-22 | IPR013765 |
| Pfam | PF00154 | recA bacterial DNA recombination protein | 61 | 248 | 2.0E-89 | IPR013765 |
| SUPERFAMILY | SSF54752 | RecA protein, C-terminal domain | 344 | 399 | 4.19E-6 | IPR023400 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 61 | 342 | 1.55E-53 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 87 | 405 | 5.0E-104 | IPR027417 |
| SMART | SM00382 | AAA_5 | 111 | 270 | 6.9E-5 | IPR003593 |
| ProSiteProfiles | PS50162 | RecA family profile 1. | 89 | 248 | 37.989155 | IPR020588 |
| ProSiteProfiles | PS50163 | RecA family profile 2. | 276 | 347 | 26.00152 | IPR020587 |
| ProSitePatterns | PS00321 | recA signature. | 288 | 296 | - | IPR020584 |
| PRINTS | PR00142 | RecA protein signature | 219 | 248 | 2.6E-74 | IPR013765 |
| PRINTS | PR00142 | RecA protein signature | 285 | 313 | 2.6E-74 | IPR013765 |
| PRINTS | PR00142 | RecA protein signature | 372 | 389 | 2.6E-74 | IPR013765 |
| PRINTS | PR00142 | RecA protein signature | 181 | 210 | 2.6E-74 | IPR013765 |
| PRINTS | PR00142 | RecA protein signature | 318 | 347 | 2.6E-74 | IPR013765 |
| PRINTS | PR00142 | RecA protein signature | 147 | 176 | 2.6E-74 | IPR013765 |
| Hamap | MF_00268 | Protein RecA [recA]. | 58 | 404 | 41.528423 | IPR013765 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 404 | 440 | - | - |
Gene Ontology
Biological Process:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G19490.1 | recA DNA recombination family protein. | 0 |
| RefSeq | XP_034700544.1 | DNA repair protein recA homolog 3, mitochondrial isoform X2 [Vitis riparia] | 0 |
| Q9ZUP2 | DNA repair protein recA homolog 3, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=At2g19490 PE=2 SV=2 | 0 | |
| TrEMBL | A0A834YQM6 | DNA repair protein recA homolog 3, mitochondrial-like OS=Tetracentron sinense OX=13715 GN=HHK36_025301 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology