Basic Information
Locus ID:
TC12G1005
Species & Taxonomic ID:
Tamarix chinensis & 189791
Genome Assembly:
GCA_030549775.1
Description:
Chromatin structure-remodeling complex subunit RSC1-like
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr12 | 45397536 | 45405399 | - | TC12G1005 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.71 | 25,523.43 Da | 51.71 | 62.58 | -0.72 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF01426 | BAH domain | 27 | 140 | 2.9E-22 | IPR001025 |
| Pfam | PF00628 | PHD-finger | 145 | 193 | 6.5E-10 | IPR019787 |
| SUPERFAMILY | SSF82061 | BAH domain | 25 | 129 | 2.62E-6 | - |
| SUPERFAMILY | SSF57903 | FYVE/PHD zinc finger | 137 | 195 | 3.1E-18 | IPR011011 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 138 | 209 | 1.2E-19 | IPR013083 |
| Gene3D | G3DSA:2.30.30.490 | - | 3 | 137 | 4.7E-29 | IPR043151 |
| SMART | SM00249 | PHD_3 | 145 | 192 | 1.4E-7 | IPR001965 |
| SMART | SM00439 | BAH_4 | 26 | 141 | 3.7E-39 | IPR001025 |
| ProSiteProfiles | PS50016 | Zinc finger PHD-type profile. | 143 | 194 | 8.9649 | IPR019787 |
| ProSiteProfiles | PS51038 | BAH domain profile. | 26 | 141 | 22.627371 | IPR001025 |
| ProSitePatterns | PS01359 | Zinc finger PHD-type signature. | 146 | 191 | - | IPR019786 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G22140.2 | PHD finger family protein / bromo-adjacent homology (BAH) domain-containing protein. | 0 |
| RefSeq | XP_052194328.1 | chromatin remodeling protein SHL-like isoform X2 [Diospyros lotus] | 0 |
| F4JL28 | Chromatin remodeling protein EBS OS=Arabidopsis thaliana OX=3702 GN=EBS PE=1 SV=1 | 0 | |
| TrEMBL | A0A1S3Z6V2 | chromatin remodeling protein SHL-like isoform X1 OS=Nicotiana tabacum OX=4097 GN=LOC107783649 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology