Basic Information
Locus ID:
TC12G0987
Species & Taxonomic ID:
Tamarix chinensis & 189791
Genome Assembly:
GCA_030549775.1
Description:
The coatomer is a cytosolic protein complex that binds to dilysine motifs and reversibly associates with Golgi non- clathrin-coated vesicles, which further mediate biosynthetic protein transport from the ER, via the Golgi up to the trans Golgi network
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr12 | 44953986 | 44967081 | + | TC12G0987 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.69 | 136,653.73 Da | 33.52 | 92.94 | -0.19 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00200 | WD40 | 9 | 316 | 3.24342E-76 | - |
| Pfam | PF00400 | WD domain, G-beta repeat | 84 | 121 | 4.9E-8 | IPR001680 |
| Pfam | PF06957 | Coatomer (COPI) alpha subunit C-terminus | 815 | 1219 | 2.3E-161 | IPR010714 |
| Pfam | PF00400 | WD domain, G-beta repeat | 197 | 230 | 5.1E-4 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 126 | 163 | 1.6E-7 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 45 | 79 | 6.6E-5 | IPR001680 |
| Pfam | PF04053 | Coatomer WD associated region | 345 | 768 | 1.7E-128 | IPR006692 |
| Pfam | PF00400 | WD domain, G-beta repeat | 240 | 275 | 1.2E-5 | IPR001680 |
| SUPERFAMILY | SSF50974 | Nitrous oxide reductase, N-terminal domain | 246 | 549 | 5.49E-7 | IPR011045 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 4 | 314 | 4.27E-74 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 1 | 318 | 6.0E-126 | IPR015943 |
| Gene3D | G3DSA:1.25.40.470 | - | 640 | 812 | 1.0E-64 | - |
| SMART | SM00320 | WD40_4 | 82 | 121 | 3.1E-9 | IPR001680 |
| SMART | SM00320 | WD40_4 | 192 | 231 | 2.9E-6 | IPR001680 |
| SMART | SM00320 | WD40_4 | 236 | 275 | 3.1E-6 | IPR001680 |
| SMART | SM00320 | WD40_4 | 40 | 79 | 9.2E-7 | IPR001680 |
| SMART | SM00320 | WD40_4 | 278 | 316 | 55.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 124 | 163 | 6.5E-11 | IPR001680 |
| SMART | SM00320 | WD40_4 | 2 | 37 | 98.0 | IPR001680 |
| PIRSF | PIRSF003354 | Alpha-COP | 1 | 1215 | 0.0 | IPR016391 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 199 | 233 | 10.601049 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 131 | 164 | 15.35409 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 89 | 130 | 13.549507 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 243 | 276 | 12.024679 | - |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 131 | 164 | 12.657402 | - |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 47 | 82 | 10.574686 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 199 | 240 | 13.014815 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 47 | 88 | 13.582925 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 89 | 121 | 10.759232 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 243 | 284 | 15.320672 | IPR001680 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 150 | 164 | - | IPR019775 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 108 | 122 | 2.3E-7 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 262 | 276 | 2.3E-7 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 150 | 164 | 2.3E-7 | IPR020472 |
Gene Ontology
Biological Process:
Molecular Function:
Cellular Component:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G62020.1 | Coatomer, alpha subunit. | 0 |
| RefSeq | XP_031271749.1 | coatomer subunit alpha-1 [Pistacia vera] | 0 |
| Q94A40 | Coatomer subunit alpha-1 OS=Arabidopsis thaliana OX=3702 GN=At1g62020 PE=2 SV=2 | 0 | |
| TrEMBL | A0A438DLE1 | Coatomer subunit alpha OS=Vitis vinifera OX=29760 GN=VvCHDh000382_2 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology