Basic Information
Locus ID:
TC12G0978
Species & Taxonomic ID:
Tamarix chinensis & 189791
Genome Assembly:
GCA_030549775.1
Description:
protein binding
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr12 | 44635858 | 44643499 | + | TC12G0978 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.59 | 41,270.02 Da | 41.83 | 80.73 | -0.56 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF14604 | Variant SH3 domain | 308 | 356 | 3.8E-11 | IPR001452 |
| SUPERFAMILY | SSF103657 | BAR/IMD domain-like | 46 | 257 | 1.5E-25 | IPR027267 |
| SUPERFAMILY | SSF50044 | SH3-domain | 303 | 358 | 6.96E-17 | IPR036028 |
| Gene3D | G3DSA:2.30.30.40 | SH3 Domains | 306 | 358 | 7.4E-17 | - |
| Gene3D | G3DSA:1.20.1270.60 | Arfaptin homology (AH) domain/BAR domain | 44 | 267 | 4.3E-12 | IPR027267 |
| SMART | SM00326 | SH3_2 | 304 | 359 | 1.9E-14 | IPR001452 |
| ProSiteProfiles | PS50002 | Src homology 3 (SH3) domain profile. | 301 | 360 | 20.823627 | IPR001452 |
| PRINTS | PR00499 | Neutrophil cytosol factor 2 signature | 342 | 355 | 3.5E-5 | - |
| PRINTS | PR00499 | Neutrophil cytosol factor 2 signature | 306 | 326 | 3.5E-5 | - |
| PRINTS | PR00499 | Neutrophil cytosol factor 2 signature | 326 | 342 | 3.5E-5 | - |
| Coils | Coil | Coil | 148 | 168 | - | - |
| Coils | Coil | Coil | 243 | 263 | - | - |
| Coils | Coil | Coil | 219 | 239 | - | - |
| Coils | Coil | Coil | 185 | 212 | - | - |
| Coils | Coil | Coil | 106 | 130 | - | - |
| Coils | Coil | Coil | 1 | 21 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G34660.1 | SH3 domain-containing protein. | 0 |
| RefSeq | XP_010690773.1 | SH3 domain-containing protein 2 [Beta vulgaris subsp. vulgaris] | 0 |
| Q8VWF1 | SH3 domain-containing protein 2 OS=Arabidopsis thaliana OX=3702 GN=SH3P2 PE=1 SV=1 | 0 | |
| TrEMBL | A0A2C9W0M4 | SH3 domain-containing protein OS=Manihot esculenta OX=3983 GN=MANES_04G084500 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology