Basic Information
Locus ID:
TC12G0899
Species & Taxonomic ID:
Tamarix chinensis & 189791
Genome Assembly:
GCA_030549775.1
Description:
E3 ubiquitin-protein ligase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr12 | 42619370 | 42632072 | - | TC12G0899 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.71 | 71,012.30 Da | 47.94 | 69.16 | -0.29 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16481 | RING-H2_TTC3 | 606 | 648 | 5.74973E-16 | - |
| Pfam | PF13639 | Ring finger domain | 607 | 648 | 1.2E-10 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 606 | 651 | 1.65E-17 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 569 | 652 | 6.2E-17 | IPR013083 |
| SMART | SM00184 | ring_2 | 607 | 647 | 7.2E-8 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 607 | 648 | 12.090947 | IPR001841 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 21 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 19 | - | - |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G34040.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_021274247.1 | E3 ubiquitin-protein ligase MBR2 [Herrania umbratica] | 0 |
| O49500 | E3 ubiquitin-protein ligase MBR2 OS=Arabidopsis thaliana OX=3702 GN=MBR2 PE=1 SV=1 | 0 | |
| TrEMBL | A0A5B6ZQK9 | Putative E3 ubiquitin-protein ligase MBR2 isoform X1 OS=Davidia involucrata OX=16924 GN=Din_015237 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Tamaricaceae | Reaumuria soongarica | 1 | MSTRG.17189_chr09_+ |
| Tamaricaceae | Tamarix chinensis | 1 | TC12G0899 |