Basic Information
Locus ID:
TC12G0807
Species & Taxonomic ID:
Tamarix chinensis & 189791
Genome Assembly:
GCA_030549775.1
Description:
Hippocampus abundant transcript-like protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr12 | 39223423 | 39238610 | + | TC12G0807 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.70 | 47,172.76 Da | 38.38 | 113.00 | 0.65 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd17330 | MFS_SLC46_TetA_like | 10 | 420 | 9.04562E-55 | - |
| Pfam | PF07690 | Major Facilitator Superfamily | 10 | 381 | 6.3E-24 | IPR011701 |
| SUPERFAMILY | SSF103473 | MFS general substrate transporter | 10 | 414 | 5.62E-38 | IPR036259 |
| Gene3D | G3DSA:1.20.1250.20 | MFS general substrate transporter like domains | 7 | 419 | 1.7E-39 | IPR036259 |
| ProSiteProfiles | PS50850 | Major facilitator superfamily (MFS) profile. | 6 | 427 | 10.335354 | IPR020846 |
| PRINTS | PR01035 | Tetracycline resistance protein signature | 365 | 388 | 6.0E-5 | IPR001958 |
| PRINTS | PR01035 | Tetracycline resistance protein signature | 56 | 72 | 6.0E-5 | IPR001958 |
| PRINTS | PR01035 | Tetracycline resistance protein signature | 305 | 326 | 6.0E-5 | IPR001958 |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G42210.1 | Major facilitator superfamily protein. | 0 |
| RefSeq | XP_021753018.1 | hippocampus abundant transcript 1 protein-like [Chenopodium quinoa] | 0 |
| Q5SR56 | Hippocampus abundant transcript-like protein 1 OS=Homo sapiens OX=9606 GN=MFSD14B PE=1 SV=3 | 0 | |
| TrEMBL | A0A0K9QD99 | MFS domain-containing protein OS=Spinacia oleracea OX=3562 GN=SOVF_192340 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology