Basic Information
Locus ID:
TC12G0755
Species & Taxonomic ID:
Tamarix chinensis & 189791
Genome Assembly:
GCA_030549775.1
Description:
E3 ubiquitin-protein ligase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr12 | 37454732 | 37465638 | + | TC12G0755 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.68 | 202,525.59 Da | 50.16 | 85.63 | -0.28 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00078 | HECTc | 1470 | 1882 | 4.48574E-123 | IPR000569 |
| Pfam | PF00632 | HECT-domain (ubiquitin-transferase) | 1517 | 1887 | 7.6E-83 | IPR000569 |
| SUPERFAMILY | SSF48371 | ARM repeat | 185 | 650 | 2.8E-40 | IPR016024 |
| SUPERFAMILY | SSF56204 | Hect, E3 ligase catalytic domain | 1462 | 1880 | 2.49E-95 | IPR035983 |
| Gene3D | G3DSA:3.90.1750.10 | Hect, E3 ligase catalytic domains | 1410 | 1649 | 4.5E-44 | - |
| Gene3D | G3DSA:3.30.2410.10 | Hect, E3 ligase catalytic domain | 1758 | 1885 | 7.1E-33 | - |
| Gene3D | G3DSA:1.25.10.10 | - | 173 | 492 | 1.0E-50 | IPR011989 |
| SMART | SM00119 | hect_3 | 1481 | 1887 | 3.4E-86 | IPR000569 |
| SMART | SM00185 | arm_5 | 216 | 257 | 72.0 | IPR000225 |
| SMART | SM00185 | arm_5 | 299 | 339 | 73.0 | IPR000225 |
| SMART | SM00185 | arm_5 | 342 | 380 | 8.3 | IPR000225 |
| ProSiteProfiles | PS50237 | HECT domain profile. | 1587 | 1887 | 55.699818 | IPR000569 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1126 | 1164 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1276 | 1304 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 663 | 698 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1046 | 1060 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 964 | 1013 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 73 | 114 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 508 | 528 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1134 | 1164 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 964 | 1080 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 508 | 529 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 127 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 10 | 61 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1191 | 1210 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G38600.1 | HEAT repeat ;HECT-domain (ubiquitin-transferase). encodes a member of HECT ubiquitin protein ligase family that is involved in trichome cell morphogenesis. Mutants in this gene exhibit supernumerary trichome branches and increased DNA content. | 0 |
| RefSeq | XP_021753072.1 | E3 ubiquitin-protein ligase UPL3-like [Chenopodium quinoa] | 0 |
| Q6WWW4 | E3 ubiquitin-protein ligase UPL3 OS=Arabidopsis thaliana OX=3702 GN=UPL3 PE=1 SV=1 | 0 | |
| TrEMBL | A0A0K9R9A0 | HECT-type E3 ubiquitin transferase OS=Spinacia oleracea OX=3562 GN=SOVF_097120 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology