Basic Information
Locus ID:
TC12G0417
Species & Taxonomic ID:
Tamarix chinensis & 189791
Genome Assembly:
GCA_030549775.1
Description:
E3 ubiquitin-protein ligase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr12 | 23655778 | 23676013 | + | TC12G0417 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.93 | 51,962.32 Da | 39.47 | 101.44 | 0.12 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF12796 | Ankyrin repeats (3 copies) | 119 | 239 | 2.2E-17 | IPR020683 |
| Pfam | PF12796 | Ankyrin repeats (3 copies) | 54 | 112 | 1.9E-7 | IPR020683 |
| Pfam | PF12796 | Ankyrin repeats (3 copies) | 297 | 368 | 1.3E-10 | IPR020683 |
| SUPERFAMILY | SSF48403 | Ankyrin repeat | 54 | 368 | 1.76E-52 | IPR036770 |
| Gene3D | G3DSA:1.25.40.20 | - | 198 | 275 | 4.0E-8 | IPR036770 |
| Gene3D | G3DSA:1.25.40.20 | - | 292 | 378 | 1.9E-15 | IPR036770 |
| Gene3D | G3DSA:1.25.40.20 | - | 49 | 197 | 3.5E-32 | IPR036770 |
| SMART | SM00248 | ANK_2a | 148 | 178 | 0.041 | IPR002110 |
| SMART | SM00248 | ANK_2a | 348 | 376 | 560.0 | IPR002110 |
| SMART | SM00248 | ANK_2a | 211 | 240 | 5.5E-6 | IPR002110 |
| SMART | SM00248 | ANK_2a | 315 | 344 | 3.0E-5 | IPR002110 |
| SMART | SM00248 | ANK_2a | 114 | 143 | 0.0029 | IPR002110 |
| SMART | SM00248 | ANK_2a | 81 | 110 | 4.0E-5 | IPR002110 |
| ProSiteProfiles | PS50297 | Ankyrin repeat region circular profile. | 81 | 112 | 12.22224 | - |
| ProSiteProfiles | PS50088 | Ankyrin repeat profile. | 148 | 169 | 9.965 | IPR002110 |
| ProSiteProfiles | PS50088 | Ankyrin repeat profile. | 211 | 243 | 12.84968 | IPR002110 |
| ProSiteProfiles | PS50297 | Ankyrin repeat region circular profile. | 148 | 169 | 9.940542 | - |
| ProSiteProfiles | PS50297 | Ankyrin repeat region circular profile. | 315 | 346 | 11.877333 | - |
| ProSiteProfiles | PS50088 | Ankyrin repeat profile. | 114 | 146 | 10.178679 | IPR002110 |
| ProSiteProfiles | PS50088 | Ankyrin repeat profile. | 81 | 113 | 13.33046 | IPR002110 |
| ProSiteProfiles | PS50297 | Ankyrin repeat region circular profile. | 114 | 145 | 9.091537 | - |
| ProSiteProfiles | PS50088 | Ankyrin repeat profile. | 315 | 347 | 13.09007 | IPR002110 |
| ProSiteProfiles | PS50297 | Ankyrin repeat region circular profile. | 211 | 239 | 12.328365 | - |
| PRINTS | PR01415 | Ankyrin repeat signature | 331 | 345 | 1.8E-5 | IPR002110 |
| PRINTS | PR01415 | Ankyrin repeat signature | 212 | 227 | 1.8E-5 | IPR002110 |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G57740.1 | XB3 ortholog 2 in Arabidopsis thaliana. ubiquitin ligase | 0 |
| RefSeq | XP_050130598.1 | probable E3 ubiquitin-protein ligase XBOS32 isoform X2 [Malus sylvestris] | 0 |
| Q6KAE5 | Probable E3 ubiquitin-protein ligase XBOS32 OS=Oryza sativa subsp. japonica OX=39947 GN=XBOS32 PE=2 SV=2 | 0 | |
| TrEMBL | A0A8X9A5U6 | Uncharacterized protein OS=Salvia splendens OX=180675 GN=SASPL_108935 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology