Basic Information
Locus ID:
TC12G0412
Species & Taxonomic ID:
Tamarix chinensis & 189791
Genome Assembly:
GCA_030549775.1
Description:
E3 ubiquitin-protein ligase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr12 | 23412679 | 23413242 | + | TC12G0412 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.23 | 20,959.37 Da | 59.23 | 99.09 | 0.01 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF13639 | Ring finger domain | 121 | 164 | 2.7E-11 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 106 | 174 | 1.72E-19 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 82 | 169 | 3.1E-18 | IPR013083 |
| SMART | SM00184 | ring_2 | 122 | 163 | 2.7E-7 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 122 | 164 | 12.25323 | IPR001841 |
| Coils | Coil | Coil | 180 | 187 | - | - |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G18670.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_021755877.1 | RING-H2 finger protein ATL56-like [Chenopodium quinoa] | 0 |
| Q9ZV51 | RING-H2 finger protein ATL56 OS=Arabidopsis thaliana OX=3702 GN=ATL56 PE=2 SV=1 | 0 | |
| TrEMBL | A0A7C9DKA9 | RING-type domain-containing protein OS=Opuntia streptacantha OX=393608 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology