Basic Information
Locus ID:
TC12G0238
Species & Taxonomic ID:
Tamarix chinensis & 189791
Genome Assembly:
GCA_030549775.1
Short Name:
PLDa1
Description:
Hydrolyzes glycerol-phospholipids at the terminal phosphodiesteric bond
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr12 | 13540664 | 13555422 | + | TC12G0238 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.70 | 125,644.00 Da | 40.34 | 88.73 | -0.32 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd04015 | C2_plant_PLD | 521 | 631 | 9.05768E-49 | - |
| Pfam | PF00614 | Phospholipase D Active site motif | 809 | 847 | 4.8E-10 | IPR001736 |
| Pfam | PF00566 | Rab-GTPase-TBC domain | 230 | 421 | 6.2E-35 | IPR000195 |
| Pfam | PF00168 | C2 domain | 514 | 609 | 2.4E-10 | IPR000008 |
| SUPERFAMILY | SSF47923 | Ypt/Rab-GAP domain of gyp1p | 112 | 358 | 9.29E-42 | IPR035969 |
| SUPERFAMILY | SSF49562 | C2 domain (Calcium/lipid-binding domain, CaLB) | 512 | 633 | 1.04E-16 | IPR035892 |
| SUPERFAMILY | SSF47923 | Ypt/Rab-GAP domain of gyp1p | 336 | 447 | 4.45E-28 | IPR035969 |
| SUPERFAMILY | SSF56024 | Phospholipase D/nuclease | 986 | 1086 | 2.98E-11 | - |
| SUPERFAMILY | SSF56024 | Phospholipase D/nuclease | 638 | 916 | 2.29E-33 | - |
| Gene3D | G3DSA:1.10.10.750 | - | 102 | 160 | 4.0E-6 | - |
| Gene3D | G3DSA:1.10.472.80 | - | 334 | 458 | 3.2E-32 | - |
| Gene3D | G3DSA:3.30.870.10 | Endonuclease Chain A | 682 | 927 | 2.8E-22 | - |
| Gene3D | G3DSA:3.30.870.10 | Endonuclease Chain A | 963 | 1097 | 1.0E-6 | - |
| Gene3D | G3DSA:1.10.8.270 | putative rabgap domain of human tbc1 domain family member 14 like domains | 221 | 325 | 1.0E-20 | - |
| Gene3D | G3DSA:2.60.40.150 | C2 domain | 511 | 638 | 1.4E-11 | IPR035892 |
| SMART | SM00155 | pld_4 | 809 | 847 | 7.1E-4 | IPR001736 |
| SMART | SM00164 | tbc_4 | 126 | 425 | 6.4E-40 | IPR000195 |
| SMART | SM00239 | C2_3c | 511 | 606 | 5.4E-9 | IPR000008 |
| ProSiteProfiles | PS50035 | Phospholipase D phosphodiesterase active site profile. | 809 | 847 | 10.931199 | IPR001736 |
| ProSiteProfiles | PS50004 | C2 domain profile. | 489 | 607 | 10.53532 | IPR000008 |
| ProSiteProfiles | PS50086 | TBC/rab GAP domain profile. | 131 | 399 | 31.207073 | IPR000195 |
| Coils | Coil | Coil | 98 | 125 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Pathway:
ko00564 (Glycerophospholipid metabolism)
map00564 (Glycerophospholipid metabolism)
ko00565 (Ether lipid metabolism)
map00565 (Ether lipid metabolism)
ko01100 (Metabolic pathways)
map01100 (Metabolic pathways)
ko01110 (Biosynthesis of secondary metabolites)
map01110 (Biosynthesis of secondary metabolites)
ko04014 (Ras signaling pathway)
map04014 (Ras signaling pathway)
ko04024 (cAMP signaling pathway)
map04024 (cAMP signaling pathway)
ko04071 (Sphingolipid signaling pathway)
map04071 (Sphingolipid signaling pathway)
ko04072 (Phospholipase D signaling pathway)
map04072 (Phospholipase D signaling pathway)
map04666 (Fc gamma R-mediated phagocytosis)
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G52570.1 | phospholipase D alpha 2. member of C2-PLD subfamily | 0 |
| RefSeq | XP_019456417.1 | PREDICTED: phospholipase D alpha 1-like [Lupinus angustifolius] | 0 |
| Q41142 | Phospholipase D alpha 1 OS=Ricinus communis OX=3988 GN=PLD1 PE=1 SV=1 | 0 | |
| TrEMBL | A0A498KBN0 | phospholipase D OS=Malus domestica OX=3750 GN=DVH24_017782 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology