Basic Information
Locus ID:
TC12G0220
Species & Taxonomic ID:
Tamarix chinensis & 189791
Genome Assembly:
GCA_030549775.1
Description:
ubiquitin-protein transferase activity
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr12 | 12929955 | 12930443 | - | TC12G0220 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.20 | 18,173.78 Da | 63.52 | 93.31 | -0.14 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF13639 | Ring finger domain | 43 | 85 | 4.6E-8 | IPR001841 |
| Pfam | PF06547 | Protein of unknown function (DUF1117) | 109 | 152 | 5.8E-8 | IPR010543 |
| SUPERFAMILY | SSF57850 | RING/U-box | 26 | 92 | 5.89E-17 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 30 | 99 | 1.3E-15 | IPR013083 |
| SMART | SM00184 | ring_2 | 44 | 84 | 8.5E-5 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 44 | 85 | 10.202563 | IPR001841 |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G59550.1 | zinc finger (C3HC4-type RING finger) family protein. | 0 |
| RefSeq | XP_008356868.1 | E3 ubiquitin-protein ligase RDUF1 [Malus domestica] | 0 |
| Q940T5 | E3 ubiquitin-protein ligase RDUF2 OS=Arabidopsis thaliana OX=3702 GN=DURF2 PE=1 SV=1 | 0 | |
| TrEMBL | A0A5N6RKR6 | RING-type E3 ubiquitin transferase OS=Carpinus fangiana OX=176857 GN=FH972_017344 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology