Basic Information
Locus ID:
TC11G2416
Species & Taxonomic ID:
Tamarix chinensis & 189791
Genome Assembly:
GCA_030549775.1
Description:
Belongs to the helicase family. RecQ subfamily
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr11 | 86292430 | 86354510 | - | TC11G2416 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.47 | 99,846.95 Da | 42.92 | 88.53 | -0.21 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd17920 | DEXHc_RecQ | 1 | 192 | 2.18072E-89 | - |
| Pfam | PF00270 | DEAD/DEAH box helicase | 12 | 170 | 8.1E-20 | IPR011545 |
| Pfam | PF14493 | Helix-turn-helix domain | 647 | 743 | 1.5E-17 | IPR029491 |
| Pfam | PF09382 | RQC domain | 396 | 494 | 5.5E-23 | IPR018982 |
| Pfam | PF16124 | RecQ zinc-binding | 335 | 393 | 7.9E-12 | IPR032284 |
| Pfam | PF00271 | Helicase conserved C-terminal domain | 219 | 318 | 7.0E-19 | IPR001650 |
| Pfam | PF00570 | HRDC domain | 540 | 606 | 1.6E-11 | IPR002121 |
| SUPERFAMILY | SSF47819 | HRDC-like | 536 | 611 | 3.71E-14 | IPR010997 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 17 | 331 | 4.36E-55 | IPR027417 |
| SUPERFAMILY | SSF46785 | Winged helix DNA-binding domain | 391 | 496 | 3.81E-24 | IPR036390 |
| Gene3D | G3DSA:3.40.50.300 | - | 193 | 394 | 4.4E-54 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 1 | 191 | 4.3E-70 | IPR027417 |
| Gene3D | G3DSA:1.10.10.10 | - | 395 | 519 | 2.1E-33 | IPR036388 |
| Gene3D | G3DSA:1.10.150.80 | HRDC domain | 535 | 617 | 1.0E-13 | IPR044876 |
| SMART | SM00490 | helicmild6 | 238 | 319 | 3.1E-28 | IPR001650 |
| SMART | SM00487 | ultradead3 | 6 | 203 | 1.3E-30 | IPR014001 |
| SMART | SM00341 | hrdc7 | 536 | 616 | 5.2E-4 | IPR002121 |
| SMART | SM00956 | RQC_2 | 400 | 504 | 4.4E-24 | IPR018982 |
| TIGRFAM | TIGR00614 | recQ_fam: ATP-dependent DNA helicase, RecQ family | 1 | 452 | 1.0E-147 | IPR004589 |
| ProSiteProfiles | PS51194 | Superfamilies 1 and 2 helicase C-terminal domain profile. | 216 | 364 | 19.910038 | IPR001650 |
| ProSiteProfiles | PS50967 | HRDC domain profile. | 536 | 616 | 17.898104 | IPR002121 |
| ProSiteProfiles | PS51192 | Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. | 18 | 185 | 23.800646 | IPR014001 |
Gene Ontology
Biological Process:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G31360.4 | - | 0 |
| RefSeq | XP_021769787.1 | uncharacterized protein LOC110734037 isoform X1 [Chenopodium quinoa] | 0 |
| P71359 | ATP-dependent DNA helicase RecQ OS=Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd) OX=71421 GN=recQ PE=3 SV=1 | 0 | |
| TrEMBL | A0A5J5CA52 | ATP-dependent DNA helicase OS=Nyssa sinensis OX=561372 GN=F0562_002165 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology