Basic Information
Locus ID:
TC11G2035
Species & Taxonomic ID:
Tamarix chinensis & 189791
Genome Assembly:
GCA_030549775.1
Description:
Belongs to the universal ribosomal protein uS3 family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr11 | 73468152 | 73471584 | - | TC11G2035 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.35 | 25,535.55 Da | 32.62 | 99.91 | -0.06 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd02413 | 40S_S3_KH | 10 | 90 | 6.53657E-53 | - |
| Pfam | PF00189 | Ribosomal protein S3, C-terminal domain | 101 | 183 | 1.7E-24 | IPR001351 |
| Pfam | PF07650 | KH domain | 15 | 88 | 9.9E-13 | IPR004044 |
| SUPERFAMILY | SSF54821 | Ribosomal protein S3 C-terminal domain | 88 | 186 | 1.19E-27 | IPR036419 |
| SUPERFAMILY | SSF54814 | Prokaryotic type KH domain (KH-domain type II) | 5 | 94 | 6.98E-26 | IPR009019 |
| Gene3D | G3DSA:3.30.300.20 | - | 3 | 87 | 2.7E-44 | IPR015946 |
| Gene3D | G3DSA:3.30.1140.32 | - | 88 | 214 | 3.1E-64 | IPR036419 |
| TIGRFAM | TIGR01008 | uS3_euk_arch: ribosomal protein uS3 | 5 | 205 | 1.1E-69 | IPR005703 |
| ProSiteProfiles | PS50823 | Type-2 KH domain profile. | 16 | 87 | 11.333969 | IPR004044 |
| ProSitePatterns | PS00548 | Ribosomal protein S3 signature. | 142 | 178 | - | IPR018280 |
Gene Ontology
Biological Process:
Molecular Function:
Cellular Component:
KEGG Pathway
Pathway:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G35530.1 | Ribosomal protein S3 family protein. | 0 |
| RefSeq | XP_011044352.1 | PREDICTED: 40S ribosomal protein S3-3 [Populus euphratica] | 0 |
| Q9FJA6 | Small ribosomal subunit protein uS3x OS=Arabidopsis thaliana OX=3702 GN=RPS3C PE=1 SV=1 | 0 | |
| TrEMBL | A0A8X8CFJ4 | Uncharacterized protein OS=Populus tomentosa OX=118781 GN=POTOM_043108 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology