Basic Information
Locus ID:
TC11G2030
Species & Taxonomic ID:
Tamarix chinensis & 189791
Genome Assembly:
GCA_030549775.1
Description:
Belongs to the helicase family. RecQ subfamily
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr11 | 73341289 | 73366767 | + | TC11G2030 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.56 | 72,437.89 Da | 49.68 | 78.47 | -0.37 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd18794 | SF2_C_RecQ | 437 | 570 | 4.44418E-63 | - |
| CDD | cd17920 | DEXHc_RecQ | 239 | 436 | 2.93457E-97 | - |
| Pfam | PF16124 | RecQ zinc-binding | 574 | 642 | 4.1E-12 | IPR032284 |
| Pfam | PF00271 | Helicase conserved C-terminal domain | 454 | 560 | 1.4E-14 | IPR001650 |
| Pfam | PF00270 | DEAD/DEAH box helicase | 247 | 416 | 9.9E-16 | IPR011545 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 284 | 580 | 5.94E-49 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 209 | 436 | 1.1E-82 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 437 | 645 | 7.6E-58 | IPR027417 |
| SMART | SM00487 | ultradead3 | 241 | 445 | 2.0E-26 | IPR014001 |
| SMART | SM00490 | helicmild6 | 479 | 561 | 2.0E-20 | IPR001650 |
| TIGRFAM | TIGR00614 | recQ_fam: ATP-dependent DNA helicase, RecQ family | 239 | 644 | 2.2E-148 | IPR004589 |
| ProSiteProfiles | PS51194 | Superfamilies 1 and 2 helicase C-terminal domain profile. | 451 | 604 | 17.544823 | IPR001650 |
| ProSiteProfiles | PS51192 | Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. | 253 | 429 | 19.412041 | IPR014001 |
| ProSitePatterns | PS00690 | DEAH-box subfamily ATP-dependent helicases signature. | 368 | 377 | - | IPR002464 |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G05740.1 | RECQ helicase l1. | 0 |
| RefSeq | XP_031269491.1 | ATP-dependent DNA helicase Q-like 1 [Pistacia vera] | 0 |
| Q9FT74 | ATP-dependent DNA helicase Q-like 1 OS=Arabidopsis thaliana OX=3702 GN=RECQL1 PE=2 SV=1 | 0 | |
| TrEMBL | A0A5B7BZL0 | ATP-dependent DNA helicase (Fragment) OS=Davidia involucrata OX=16924 GN=Din_043863 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology