Basic Information
Locus ID:
TC11G2004
Species & Taxonomic ID:
Tamarix chinensis & 189791
Genome Assembly:
GCA_030549775.1
Description:
Belongs to the NPH3 family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr11 | 71630699 | 71634579 | - | TC11G2004 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.49 | 80,103.25 Da | 49.70 | 88.04 | -0.30 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF03000 | NPH3 family | 289 | 555 | 3.4E-93 | IPR027356 |
| Pfam | PF00651 | BTB/POZ domain | 104 | 193 | 9.6E-6 | IPR000210 |
| SUPERFAMILY | SSF54695 | POZ domain | 94 | 193 | 1.57E-17 | IPR011333 |
| Gene3D | G3DSA:3.30.710.10 | Potassium Channel Kv1.1; Chain A | 88 | 244 | 6.9E-12 | IPR011333 |
| SMART | SM00225 | BTB_4 | 105 | 205 | 0.0022 | IPR000210 |
| ProSiteProfiles | PS51649 | NPH3 domain profile. | 289 | 579 | 91.61779 | IPR027356 |
| ProSiteProfiles | PS50097 | BTB domain profile. | 105 | 175 | 11.192007 | IPR000210 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 23 | 64 | - | - |
| Coils | Coil | Coil | 50 | 84 | - | - |
| Coils | Coil | Coil | 625 | 652 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G03250.1 | Phototropic-responsive NPH3 family protein. | 0 |
| RefSeq | XP_020413645.1 | BTB/POZ domain-containing protein At5g03250-like [Prunus persica] | 0 |
| Q9LYW0 | BTB/POZ domain-containing protein At5g03250 OS=Arabidopsis thaliana OX=3702 GN=At5g03250 PE=2 SV=1 | 0 | |
| TrEMBL | A0A5J5B9J2 | NPH3 domain-containing protein OS=Nyssa sinensis OX=561372 GN=F0562_025996 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology