Basic Information
Locus ID:
TC11G1730
Species & Taxonomic ID:
Tamarix chinensis & 189791
Genome Assembly:
GCA_030549775.1
Description:
Hippocampus abundant transcript-like protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr11 | 57363799 | 57367858 | + | TC11G1730 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.99 | 48,227.26 Da | 38.90 | 115.99 | 0.68 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd17330 | MFS_SLC46_TetA_like | 25 | 419 | 7.49472E-56 | - |
| Pfam | PF07690 | Major Facilitator Superfamily | 244 | 434 | 3.7E-12 | IPR011701 |
| Pfam | PF07690 | Major Facilitator Superfamily | 59 | 199 | 4.6E-12 | IPR011701 |
| SUPERFAMILY | SSF103473 | MFS general substrate transporter | 59 | 421 | 3.01E-35 | IPR036259 |
| Gene3D | G3DSA:1.20.1250.20 | MFS general substrate transporter like domains | 14 | 420 | 3.9E-33 | IPR036259 |
| ProSiteProfiles | PS50850 | Major facilitator superfamily (MFS) profile. | 1 | 426 | 12.377091 | IPR020846 |
| ProSitePatterns | PS00216 | Sugar transport proteins signature 1. | 76 | 92 | - | IPR005829 |
| PRINTS | PR01035 | Tetracycline resistance protein signature | 304 | 325 | 4.3E-6 | IPR001958 |
| PRINTS | PR01035 | Tetracycline resistance protein signature | 89 | 113 | 4.3E-6 | IPR001958 |
| PRINTS | PR01035 | Tetracycline resistance protein signature | 364 | 387 | 4.3E-6 | IPR001958 |
| PRINTS | PR01035 | Tetracycline resistance protein signature | 58 | 77 | 4.3E-6 | IPR001958 |
Gene Ontology
Biological Process:
Molecular Function:
Cellular Component:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G42210.1 | Major facilitator superfamily protein. | 0 |
| RefSeq | XP_021755148.1 | hippocampus abundant transcript-like protein 1 [Chenopodium quinoa] | 0 |
| TrEMBL | A0A2R6PYG7 | Hippocampus abundant transcript-like protein OS=Actinidia chinensis var. chinensis OX=1590841 GN=CEY00_Acc25303 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology