Basic Information
Locus ID:
TC11G1621
Species & Taxonomic ID:
Tamarix chinensis & 189791
Genome Assembly:
GCA_030549775.1
Description:
Zinc finger, C3HC4 type (RING finger)
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr11 | 52110494 | 52124300 | + | TC11G1621 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.42 | 97,221.88 Da | 68.48 | 64.89 | -0.95 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16647 | mRING-HC-C3HC5_NEU1 | 798 | 838 | 4.56905E-17 | - |
| Pfam | PF13920 | Zinc finger, C3HC4 type (RING finger) | 796 | 843 | 1.3E-10 | - |
| SUPERFAMILY | SSF57850 | RING/U-box | 798 | 844 | 4.95E-9 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 787 | 850 | 1.1E-13 | IPR013083 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 799 | 838 | 10.33534 | IPR001841 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 505 | 522 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 665 | 704 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 127 | 149 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 180 | 213 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 438 | 472 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 186 | 213 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 225 | 246 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 505 | 530 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 456 | 472 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G04460.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_027111430.1 | uncharacterized protein LOC113730746 isoform X1 [Coffea arabica] | 0 |
| TrEMBL | A0A5J5AXC1 | RING-type domain-containing protein OS=Nyssa sinensis OX=561372 GN=F0562_031993 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology