Basic Information
Locus ID:
TC11G1549
Species & Taxonomic ID:
Tamarix chinensis & 189791
Genome Assembly:
GCA_030549775.1
Description:
RING-type E3 ubiquitin transferase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr11 | 49550528 | 49555153 | + | TC11G1549 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.09 | 70,972.71 Da | 39.54 | 101.37 | -0.26 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16664 | RING-Ubox_PUB | 252 | 294 | 2.19032E-28 | - |
| Pfam | PF00514 | Armadillo/beta-catenin-like repeat | 459 | 496 | 9.6E-5 | IPR000225 |
| Pfam | PF00514 | Armadillo/beta-catenin-like repeat | 375 | 414 | 3.7E-11 | IPR000225 |
| Pfam | PF04564 | U-box domain | 248 | 318 | 9.8E-22 | IPR003613 |
| SUPERFAMILY | SSF57850 | RING/U-box | 246 | 324 | 1.52E-30 | - |
| SUPERFAMILY | SSF48371 | ARM repeat | 345 | 619 | 1.08E-50 | IPR016024 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 248 | 321 | 2.1E-29 | IPR013083 |
| Gene3D | G3DSA:1.25.10.10 | - | 334 | 643 | 9.7E-57 | IPR011989 |
| Gene3D | G3DSA:1.20.930.20 | - | 7 | 122 | 4.0E-9 | IPR036537 |
| SMART | SM00504 | Ubox_2 | 251 | 314 | 3.1E-35 | IPR003613 |
| SMART | SM00185 | arm_5 | 375 | 415 | 1.1E-6 | IPR000225 |
| SMART | SM00185 | arm_5 | 457 | 497 | 4.2 | IPR000225 |
| SMART | SM00185 | arm_5 | 498 | 538 | 25.0 | IPR000225 |
| SMART | SM00185 | arm_5 | 338 | 373 | 510.0 | IPR000225 |
| SMART | SM00185 | arm_5 | 539 | 579 | 80.0 | IPR000225 |
| SMART | SM00185 | arm_5 | 416 | 456 | 0.0017 | IPR000225 |
| ProSiteProfiles | PS50176 | Armadillo/plakoglobin ARM repeat profile. | 509 | 546 | 8.7324 | IPR000225 |
| ProSiteProfiles | PS50176 | Armadillo/plakoglobin ARM repeat profile. | 386 | 428 | 13.7024 | IPR000225 |
| ProSiteProfiles | PS51698 | U-box domain profile. | 247 | 321 | 43.690678 | IPR003613 |
| Coils | Coil | Coil | 605 | 625 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G54850.1 | plant U-box 14. Encodes a protein with a typical U-box domain followed by an Armadillo repeat region, a domain organization that is frequently found in plant U-box proteins. Displays ubiquitin ligase activity in vitro. | 0 |
| RefSeq | XP_021717676.1 | U-box domain-containing protein 14 [Chenopodium quinoa] | 0 |
| Q8VZ40 | U-box domain-containing protein 14 OS=Arabidopsis thaliana OX=3702 GN=PUB14 PE=1 SV=1 | 0 | |
| TrEMBL | A0A0K9QVY3 | RING-type E3 ubiquitin transferase OS=Spinacia oleracea OX=3562 GN=SOVF_135140 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology