Basic Information
Locus ID:
TC11G1297
Species & Taxonomic ID:
Tamarix chinensis & 189791
Genome Assembly:
GCA_030549775.1
Description:
Belongs to the peptidase C19 family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr11 | 38968721 | 38990210 | - | TC11G1297 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.53 | 95,087.88 Da | 46.23 | 81.61 | -0.42 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd02674 | Peptidase_C19R | 695 | 846 | 4.34893E-50 | - |
| Pfam | PF00443 | Ubiquitin carboxyl-terminal hydrolase | 288 | 846 | 1.9E-70 | IPR001394 |
| SUPERFAMILY | SSF54001 | Cysteine proteinases | 286 | 846 | 7.46E-94 | IPR038765 |
| Gene3D | G3DSA:3.90.70.10 | Cysteine proteinases | 623 | 847 | 1.1E-40 | - |
| Gene3D | G3DSA:3.30.2230.10 | - | 5 | 144 | 3.8E-7 | - |
| Gene3D | G3DSA:3.90.70.10 | Cysteine proteinases | 275 | 511 | 3.5E-66 | - |
| ProSiteProfiles | PS50235 | Ubiquitin specific protease (USP) domain profile. | 288 | 847 | 46.483479 | IPR028889 |
| ProSitePatterns | PS00973 | Ubiquitin specific protease (USP) domain signature 2. | 825 | 842 | - | IPR018200 |
| ProSitePatterns | PS00972 | Ubiquitin specific protease (USP) domain signature 1. | 289 | 304 | - | IPR018200 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 22 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 21 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G22030.1 | ubiquitin-specific protease 8. | 0 |
| RefSeq | XP_010685465.1 | ubiquitin carboxyl-terminal hydrolase 8 [Beta vulgaris subsp. vulgaris] | 0 |
| Q9C585 | Ubiquitin carboxyl-terminal hydrolase 8 OS=Arabidopsis thaliana OX=3702 GN=UBP8 PE=2 SV=2 | 0 | |
| TrEMBL | A0A7C9E6S4 | Ubiquitin carboxyl-terminal hydrolase OS=Opuntia streptacantha OX=393608 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology