Basic Information
Locus ID:
TC11G1253
Species & Taxonomic ID:
Tamarix chinensis & 189791
Genome Assembly:
GCA_030549775.1
Description:
Belongs to the peptidase C19 family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr11 | 37174505 | 37193549 | - | TC11G1253 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.92 | 148,781.55 Da | 40.75 | 82.97 | -0.51 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00121 | MATH | 121 | 244 | 2.01233E-38 | IPR002083 |
| CDD | cd02659 | peptidase_C19C | 262 | 627 | 9.37857E-148 | - |
| Pfam | PF14533 | Ubiquitin-specific protease C-terminal | 1042 | 1252 | 9.3E-56 | IPR029346 |
| Pfam | PF00917 | MATH domain | 126 | 246 | 2.2E-19 | IPR002083 |
| Pfam | PF00443 | Ubiquitin carboxyl-terminal hydrolase | 264 | 535 | 2.3E-40 | IPR001394 |
| Pfam | PF12436 | ICP0-binding domain of Ubiquitin-specific protease 7 | 958 | 1032 | 2.1E-17 | IPR024729 |
| Pfam | PF12436 | ICP0-binding domain of Ubiquitin-specific protease 7 | 726 | 906 | 3.9E-51 | IPR024729 |
| SUPERFAMILY | SSF54001 | Cysteine proteinases | 259 | 653 | 1.96E-86 | IPR038765 |
| SUPERFAMILY | SSF49599 | TRAF domain-like | 117 | 253 | 2.94E-39 | - |
| Gene3D | G3DSA:3.90.70.10 | Cysteine proteinases | 261 | 626 | 6.7E-80 | - |
| Gene3D | G3DSA:3.10.20.90 | - | 959 | 1055 | 1.7E-27 | - |
| Gene3D | G3DSA:3.10.20.90 | - | 786 | 903 | 7.4E-44 | - |
| Gene3D | G3DSA:2.60.210.10 | Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A | 117 | 260 | 2.4E-50 | IPR008974 |
| SMART | SM00061 | math_3 | 121 | 225 | 5.3E-18 | IPR002083 |
| ProSiteProfiles | PS50235 | Ubiquitin specific protease (USP) domain profile. | 264 | 625 | 37.585518 | IPR028889 |
| ProSiteProfiles | PS50144 | MATH/TRAF domain profile. | 119 | 244 | 38.443008 | IPR002083 |
| ProSitePatterns | PS00972 | Ubiquitin specific protease (USP) domain signature 1. | 265 | 280 | - | IPR018200 |
| ProSitePatterns | PS00973 | Ubiquitin specific protease (USP) domain signature 2. | 504 | 521 | - | IPR018200 |
| Coils | Coil | Coil | 634 | 665 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G06600.2 | ubiquitin-specific protease 12. Encodes a ubiquitin-specific protease. | 0 |
| RefSeq | XP_010685483.1 | ubiquitin C-terminal hydrolase 12 [Beta vulgaris subsp. vulgaris] | 0 |
| Q9FPT1 | Ubiquitin C-terminal hydrolase 12 OS=Arabidopsis thaliana OX=3702 GN=UBP12 PE=1 SV=2 | 0 | |
| TrEMBL | A0A803LXJ5 | ubiquitinyl hydrolase 1 OS=Chenopodium quinoa OX=63459 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology