Basic Information
Locus ID:
TC11G1082
Species & Taxonomic ID:
Tamarix chinensis & 189791
Genome Assembly:
GCA_030549775.1
Description:
finger protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr11 | 30440489 | 30466444 | - | TC11G1082 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.74 | 142,219.17 Da | 51.18 | 75.51 | -0.31 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd12108 | Hr-like | 68 | 195 | 1.21909E-28 | - |
| CDD | cd12108 | Hr-like | 329 | 457 | 2.69605E-19 | - |
| CDD | cd12108 | Hr-like | 674 | 829 | 3.44079E-28 | - |
| CDD | cd16464 | RING-H2_Pirh2 | 1140 | 1183 | 6.95566E-16 | - |
| Pfam | PF01814 | Hemerythrin HHE cation binding domain | 327 | 459 | 3.9E-9 | IPR012312 |
| Pfam | PF14599 | Zinc-ribbon | 1188 | 1245 | 7.4E-24 | IPR039512 |
| Pfam | PF01814 | Hemerythrin HHE cation binding domain | 65 | 196 | 1.1E-11 | IPR012312 |
| Pfam | PF05495 | CHY zinc finger | 1012 | 1087 | 1.5E-18 | IPR008913 |
| Pfam | PF01814 | Hemerythrin HHE cation binding domain | 670 | 829 | 1.8E-6 | IPR012312 |
| SUPERFAMILY | SSF161219 | CHY zinc finger-like | 1004 | 1068 | 4.97E-18 | IPR037274 |
| SUPERFAMILY | SSF57850 | RING/U-box | 1139 | 1186 | 9.42E-8 | - |
| SUPERFAMILY | SSF161245 | Zinc hairpin stack | 1078 | 1133 | 1.96E-15 | IPR037275 |
| Gene3D | G3DSA:1.20.120.520 | nmb1532 protein domain like | 62 | 215 | 1.4E-32 | - |
| Gene3D | G3DSA:2.20.28.10 | - | 1212 | 1252 | 6.8E-16 | - |
| Gene3D | G3DSA:1.20.120.520 | nmb1532 protein domain like | 667 | 893 | 6.0E-25 | - |
| Gene3D | G3DSA:1.20.120.520 | nmb1532 protein domain like | 328 | 475 | 5.0E-17 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 1137 | 1185 | 1.4E-8 | IPR013083 |
| SMART | SM00184 | ring_2 | 1141 | 1182 | 1.1E-5 | IPR001841 |
| ProSiteProfiles | PS51266 | Zinc finger CHY-type profile. | 1005 | 1074 | 25.160324 | IPR008913 |
| ProSiteProfiles | PS51270 | Zinc finger CTCHY-type profile. | 1077 | 1140 | 29.432285 | IPR017921 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 1141 | 1183 | 11.205767 | IPR001841 |
| Coils | Coil | Coil | 335 | 355 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G18290.1 | zinc finger protein-related. Encodes BRUTUS (BTS), a putative E3 ligase protein with metal ion binding and DNA binding domains, which negatively regulates the response to iron deficiency. | 0 |
| RefSeq | XP_010681649.2 | zinc finger protein BRUTUS isoform X1 [Beta vulgaris subsp. vulgaris] | 0 |
| Q8LPQ5 | Zinc finger protein BRUTUS OS=Arabidopsis thaliana OX=3702 GN=BTS PE=1 SV=1 | 0 | |
| TrEMBL | A0A7C8YHY9 | Zinc finger protein BRUTUS OS=Opuntia streptacantha OX=393608 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology