Basic Information
Locus ID:
TC11G0699
Species & Taxonomic ID:
Tamarix chinensis & 189791
Genome Assembly:
GCA_030549775.1
Description:
RING-H2 finger protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr11 | 18011533 | 18012870 | - | TC11G0699 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.43 | 49,099.61 Da | 73.12 | 72.00 | -0.49 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16454 | RING-H2_PA-TM-RING | 162 | 205 | 2.22122E-18 | - |
| Pfam | PF13639 | Ring finger domain | 162 | 205 | 2.0E-13 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 142 | 210 | 1.08E-21 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 130 | 210 | 3.4E-22 | IPR013083 |
| SMART | SM00184 | ring_2 | 163 | 204 | 6.5E-7 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 163 | 205 | 12.872856 | IPR001841 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 244 | 262 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 215 | 262 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 361 | 391 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 216 | 243 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 424 | 445 | - | - |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G33565.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_021758655.1 | RING-H2 finger protein ATL52-like [Chenopodium quinoa] | 0 |
| Q9LX93 | E3 ubiquitin-protein ligase RING1 OS=Arabidopsis thaliana OX=3702 GN=ATL55 PE=1 SV=1 | 0 | |
| TrEMBL | A0A7C9DJC3 | RING-type E3 ubiquitin transferase OS=Opuntia streptacantha OX=393608 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology