Basic Information
Locus ID:
TC11G0658
Species & Taxonomic ID:
Tamarix chinensis & 189791
Genome Assembly:
GCA_030549775.1
Description:
Belongs to the TRAFAC class dynamin-like GTPase superfamily. Dynamin Fzo YdjA family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr11 | 17069269 | 17082770 | + | TC11G0658 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.13 | 88,411.32 Da | 61.17 | 94.94 | -0.30 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd08771 | DLP_1 | 41 | 314 | 2.23475E-141 | IPR001401 |
| Pfam | PF02212 | Dynamin GTPase effector domain | 673 | 760 | 4.2E-26 | IPR003130 |
| Pfam | PF01031 | Dynamin central region | 237 | 520 | 1.6E-101 | IPR000375 |
| Pfam | PF00350 | Dynamin family | 46 | 226 | 6.0E-54 | IPR045063 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 20 | 322 | 1.18E-79 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 19 | 324 | 4.1E-117 | IPR027417 |
| Gene3D | G3DSA:1.20.120.1240 | Dynamin, middle domain | 345 | 555 | 6.7E-62 | - |
| Gene3D | G3DSA:1.20.120.1240 | Dynamin, middle domain | 614 | 741 | 2.8E-20 | - |
| SMART | SM00302 | GED_2 | 670 | 761 | 3.8E-33 | IPR003130 |
| SMART | SM00053 | dynamin_3 | 18 | 266 | 8.0E-123 | IPR001401 |
| ProSiteProfiles | PS51388 | GED domain profile. | 675 | 766 | 28.421492 | IPR020850 |
| ProSiteProfiles | PS51718 | Dynamin-type guanine nucleotide-binding (G) domain profile. | 40 | 314 | 63.283001 | IPR030381 |
| PRINTS | PR00195 | Dynamin signature | 146 | 163 | 3.7E-56 | IPR022812 |
| PRINTS | PR00195 | Dynamin signature | 43 | 61 | 3.7E-56 | IPR022812 |
| PRINTS | PR00195 | Dynamin signature | 196 | 214 | 3.7E-56 | IPR022812 |
| PRINTS | PR00195 | Dynamin signature | 68 | 85 | 3.7E-56 | IPR022812 |
| PRINTS | PR00195 | Dynamin signature | 215 | 231 | 3.7E-56 | IPR022812 |
| PRINTS | PR00195 | Dynamin signature | 238 | 257 | 3.7E-56 | IPR022812 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 531 | 560 | - | - |
| Coils | Coil | Coil | 741 | 761 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G33650.1 | dynamin-related protein 3A. Encodes a protein with high sequence similarity to the dynamin superfamily. Among those members ADL2 was most closely related to Dnm1p of yeast and likely a member of the Vps1p subfamily. Widely expressed in various tissues with highest expression in flower tissues. Localizes to the chloroplast, mitochondrion and peroxisome. Involved in peroxisome and mitochondria fission in combination with DRP3B. | 0 |
| RefSeq | XP_021714036.1 | dynamin-related protein 3B-like [Chenopodium quinoa] | 0 |
| Q8S944 | Dynamin-related protein 3A OS=Arabidopsis thaliana OX=3702 GN=DRP3A PE=1 SV=2 | 0 | |
| TrEMBL | A0A7C8YHR1 | Dynamin-related protein 3A OS=Opuntia streptacantha OX=393608 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 2 | jg26358, jg30167 |
| Aizoaceae | Mesembryanthemum crystallinum | 2 | gene_24151, gene_26319 |
| Amaranthaceae | Atriplex hortensis | 2 | Ah009339, Ah027217 |
| Amaranthaceae | Beta vulgaris | 2 | BVRB_6g134060, BVRB_9g221380 |
| Amaranthaceae | Salicornia bigelovii | 4 | Sbi_jg10780, Sbi_jg12603, Sbi_jg47519, Sbi_jg53336 |
| Amaranthaceae | Salicornia europaea | 2 | Seu_jg21769, Seu_jg8587 |
| Amaranthaceae | Suaeda aralocaspica | 2 | GOSA_00010427, GOSA_00018715 |
| Amaranthaceae | Suaeda glauca | 6 | Sgl33658, Sgl38970, Sgl65549, Sgl65619, Sgl69872, Sgl69915 |
| Amaranthaceae | Chenopodium album | 8 | gene:ENSEOMG00000001447, gene:ENSEOMG00000002501 ... |
| Amaranthaceae | Chenopodium quinoa | 4 | CQ.Regalona.r1.6AG0023190, CQ.Regalona.r1.6BG0024510 ... |
| Anacardiaceae | Pistacia vera | 2 | pistato.v30102360, pistato.v30251260 |
| Apiaceae | Apium graveolens | 4 | Ag1G00670, Ag1G00671, Ag1G00675, Ag9G00267 |
| Arecaceae | Cocos nucifera | 3 | COCNU_02G008760, COCNU_11G003050, COCNU_15G004760 |
| Arecaceae | Phoenix dactylifera | 2 | gene-LOC103710572, gene-LOC103716152 |
| Asparagaceae | Asparagus officinalis | 3 | AsparagusV1_02.448.V1.1, AsparagusV1_09.959.V1.1 ... |
| Asteraceae | Flaveria trinervia | 1 | FtriNA23159 |
| Brassicaceae | Arabidopsis thaliana | 2 | AT2G14120.3, AT4G33650.2 |
| Brassicaceae | Eutrema salsugineum | 2 | Thhalv10022566m.g.v1.0, Thhalv10024438m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 2 | Sp3g27480.v2.2, Sp7g31380.v2.2 |
| Brassicaceae | Brassica nigra | 3 | BniB02g086410.2N, BniB03g009360.2N, BniB05g004450.2N |
| Casuarinaceae | Casuarina equisetifolia | 5 | Ceq03G2849, Ceq04G2497, Ceq04G2498, Ceq04G2499, Ceq09G0567 |
| Casuarinaceae | Casuarina glauca | 4 | Cgl04G2725, Cgl04G2726, Cgl07G2100, Cgl09G0593 |
| Cymodoceaceae | Cymodocea nodosa | 2 | gene.Cymno01g07420, gene.Cymno11g05250 |
| Dunaliellaceae | Dunaliella salina | 1 | Dusal.0633s00006.v1.0 |
| Hydrocharitaceae | Thalassia testudinum | 2 | gene.Thate03g11470, gene.Thate04g10470 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 1 | nbisL1-mrna-3893 |
| Nitrariaceae | Nitraria sibirica | 2 | evm.TU.LG05.566, evm.TU.LG05.766 |
| Plantaginaceae | Plantago ovata | 3 | Pov_00002165, Pov_00028749, Pov_00039734 |
| Plumbaginaceae | Limonium bicolor | 3 | Lb3G18220, Lb4G21985, Lb8G35668 |
| Poaceae | Echinochloa crus-galli | 6 | AH02.4334, AH09.771, BH02.4362, BH09.781, CH01.5311 ... |
| Poaceae | Eleusine coracana subsp. coracana | 5 | gene-QOZ80_1AG0044610, gene-QOZ80_1BG0094610 ... |
| Poaceae | Hordeum vulgare | 2 | HORVU.MOREX.r3.2HG0161510.1, HORVU.MOREX.r3.3HG0310450.1 |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_043560 |
| Poaceae | Oryza coarctata | 3 | Oco01G028550, Oco02G029640, Oco08G003980 |
| Poaceae | Oryza sativa | 2 | LOC_Os01g69130.1, LOC_Os04g31190.1 |
| Poaceae | Paspalum vaginatum | 2 | gene-BS78_03G383000, gene-BS78_06G063700 |
| Poaceae | Puccinellia tenuiflora | 4 | Pt_Chr0303048, Pt_Chr0405907, Pt_Chr0600531, Pt_Chr0600539 |
| Poaceae | Sporobolus alterniflorus | 8 | Chr02G002460, Chr03G022880, Chr05G031980, Chr08G019150 ... |
| Poaceae | Thinopyrum elongatum | 2 | Tel2E01G503500, Tel3E01G680400 |
| Poaceae | Triticum dicoccoides | 3 | gene_TRIDC2AG040650, gene_TRIDC2BG043660 ... |
| Poaceae | Triticum aestivum | 7 | TraesCS2A02G281000.2, TraesCS2B02G298400.1 ... |
| Poaceae | Zea mays | 3 | Zm00001eb085760_P005, Zm00001eb143240_P003 ... |
| Poaceae | Zoysia japonica | 3 | nbis-gene-10988, nbis-gene-28339, nbis-gene-7907 |
| Poaceae | Zoysia macrostachya | 3 | Zma_g11820, Zma_g21141, Zma_g9270 |
| Portulacaceae | Portulaca oleracea | 4 | evm.TU.LG05.298, evm.TU.LG08.1072, evm.TU.LG22.813 ... |
| Posidoniaceae | Posidonia oceanica | 2 | gene.Posoc03g13580, gene.Posoc04g11250 |
| Rhizophoraceae | Bruguiera sexangula | 2 | evm.TU.Scaffold_1_RagTag.1949, evm.TU.Scaffold_2_RagTag.487 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-5737 |
| Rhizophoraceae | Ceriops tagal | 2 | nbisL1-mrna-13629, nbisL1-mrna-2044 |
| Rhizophoraceae | Ceriops zippeliana | 2 | nbisL1-mrna-3576, nbisL1-mrna-9691 |
| Rhizophoraceae | Kandelia candel | 2 | evm.TU.utg000009l.671, evm.TU.utg000016l.305 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00016490 |
| Rhizophoraceae | Rhizophora apiculata | 2 | nbisL1-mrna-2595, nbisL1-mrna-4867 |
| Rhizophoraceae | Rhizophora mangle | 2 | nbisL1-mrna-13892, nbisL1-mrna-16562 |
| Salicaceae | Populus euphratica | 3 | populus_peu22701, populus_peu24131, populus_peu37408 |
| Solanaceae | Lycium barbarum | 4 | gene-LOC132598854, gene-LOC132609453, gene-LOC132609454 ... |
| Solanaceae | Solanum chilense | 4 | SOLCI001249400, SOLCI004859400, SOLCI005038700 ... |
| Solanaceae | Solanum pennellii | 3 | gene-LOC107004619, gene-LOC107008072, gene-LOC107028925 |
| Tamaricaceae | Reaumuria soongarica | 5 | STRG.20553_chr08_+, gene_12630, gene_16220, gene_2841 ... |
| Tamaricaceae | Tamarix chinensis | 4 | TC10G0591, TC10G0596, TC11G0658, TC12G0612 |
| Zosteraceae | Zostera marina | 2 | Zosma03g06250.v3.1, Zosma06g10030.v3.1 |