Basic Information
Locus ID:
TC11G0536
Species & Taxonomic ID:
Tamarix chinensis & 189791
Genome Assembly:
GCA_030549775.1
Description:
Protein DA1
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr11 | 13183647 | 13186795 | + | TC11G0536 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.72 | 57,668.81 Da | 55.23 | 62.30 | -0.66 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd09396 | LIM_DA1 | 136 | 188 | 3.69171E-28 | - |
| Pfam | PF12315 | Protein DA1 | 285 | 506 | 1.5E-104 | IPR022087 |
| Pfam | PF00412 | LIM domain | 136 | 190 | 1.7E-9 | IPR001781 |
| SUPERFAMILY | SSF57716 | Glucocorticoid receptor-like (DNA-binding domain) | 162 | 219 | 4.63E-9 | - |
| SUPERFAMILY | SSF57716 | Glucocorticoid receptor-like (DNA-binding domain) | 128 | 161 | 1.3E-7 | - |
| Gene3D | G3DSA:2.10.110.10 | Cysteine Rich Protein | 128 | 193 | 1.9E-15 | - |
| SMART | SM00726 | uim | 52 | 71 | 1.2 | IPR003903 |
| SMART | SM00132 | lim_4 | 135 | 187 | 8.9E-12 | IPR001781 |
| SMART | SM00726 | uim | 88 | 107 | 28.0 | IPR003903 |
| ProSiteProfiles | PS50023 | LIM domain profile. | 134 | 194 | 11.880099 | IPR001781 |
| ProSitePatterns | PS00478 | LIM zinc-binding domain signature. | 136 | 170 | - | IPR001781 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 431 | 459 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 72 | 119 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 431 | 454 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 72 | 95 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G36860.1 | LIM domain-containing protein. | 0 |
| RefSeq | XP_021847823.1 | protein DA1-related 1 isoform X1 [Spinacia oleracea] | 0 |
| Q8W4F0 | Protein DA1-related 1 OS=Arabidopsis thaliana OX=3702 GN=DAR1 PE=1 SV=3 | 0 | |
| TrEMBL | A0A0K9RQ70 | LIM zinc-binding domain-containing protein OS=Spinacia oleracea OX=3562 GN=SOVF_041660 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology