Basic Information
Locus ID:
TC11G0423
Species & Taxonomic ID:
Tamarix chinensis & 189791
Genome Assembly:
GCA_030549775.1
Description:
F-box protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr11 | 9900641 | 9902592 | - | TC11G0423 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.14 | 56,551.56 Da | 53.02 | 68.50 | -0.45 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF01753 | MYND finger | 428 | 467 | 6.3E-7 | IPR002893 |
| SUPERFAMILY | SSF144232 | HIT/MYND zinc finger-like | 422 | 473 | 5.06E-9 | - |
| SUPERFAMILY | SSF81901 | HCP-like | 225 | 375 | 3.53E-13 | - |
| Gene3D | G3DSA:1.25.40.10 | Tetratricopeptide repeat domain | 199 | 369 | 1.1E-17 | IPR011990 |
| Gene3D | G3DSA:6.10.140.2220 | - | 413 | 471 | 1.6E-9 | - |
| ProSiteProfiles | PS50865 | Zinc finger MYND-type profile. | 425 | 467 | 10.781668 | IPR002893 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 474 | 512 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 480 | 512 | - | - |
| Coils | Coil | Coil | 488 | 508 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G67340.1 | HCP-like superfamily protein with MYND-type zinc finger. | 0 |
| RefSeq | XP_022726035.1 | F-box protein At1g67340-like [Durio zibethinus] | 0 |
| Q9FYF9 | F-box protein At1g67340 OS=Arabidopsis thaliana OX=3702 GN=At1g67340 PE=1 SV=1 | 0 | |
| TrEMBL | A0A1R3GQV0 | Zinc finger, MYND-type OS=Corchorus capsularis OX=210143 GN=CCACVL1_24106 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology