Basic Information
Locus ID:
TC11G0402
Species & Taxonomic ID:
Tamarix chinensis & 189791
Genome Assembly:
GCA_030549775.1
Description:
ABC transporter C family member
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr11 | 9338473 | 9344393 | + | TC11G0402 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.65 | 172,125.70 Da | 39.72 | 106.17 | 0.11 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd18579 | ABC_6TM_ABCC_D1 | 279 | 566 | 3.83801E-94 | IPR044746 |
| CDD | cd03250 | ABCC_MRP_domain1 | 591 | 796 | 3.06204E-98 | - |
| CDD | cd18580 | ABC_6TM_ABCC_D2 | 894 | 1184 | 5.94757E-86 | IPR044726 |
| CDD | cd03244 | ABCC_MRP_domain2 | 1207 | 1427 | 4.99168E-117 | - |
| Pfam | PF00664 | ABC transporter transmembrane region | 279 | 545 | 1.1E-21 | IPR011527 |
| Pfam | PF00664 | ABC transporter transmembrane region | 914 | 1136 | 1.7E-27 | IPR011527 |
| Pfam | PF00005 | ABC transporter | 618 | 748 | 1.8E-15 | IPR003439 |
| Pfam | PF00005 | ABC transporter | 1226 | 1374 | 4.4E-30 | IPR003439 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 1199 | 1435 | 3.49E-65 | IPR027417 |
| SUPERFAMILY | SSF90123 | ABC transporter transmembrane region | 896 | 1189 | 2.75E-46 | IPR036640 |
| SUPERFAMILY | SSF90123 | ABC transporter transmembrane region | 272 | 573 | 1.23E-32 | IPR036640 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 617 | 810 | 8.84E-49 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 573 | 844 | 2.8E-66 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 1192 | 1445 | 1.9E-79 | IPR027417 |
| Gene3D | G3DSA:1.20.1560.10 | ABC transporter type 1, transmembrane domain | 863 | 1190 | 3.0E-54 | IPR036640 |
| Gene3D | G3DSA:1.20.1560.10 | ABC transporter type 1, transmembrane domain | 247 | 572 | 5.5E-47 | IPR036640 |
| SMART | SM00382 | AAA_5 | 1235 | 1426 | 2.6E-12 | IPR003593 |
| SMART | SM00382 | AAA_5 | 622 | 796 | 4.2E-14 | IPR003593 |
| ProSiteProfiles | PS50893 | ATP-binding cassette, ABC transporter-type domain profile. | 1209 | 1443 | 17.740562 | IPR003439 |
| ProSiteProfiles | PS50929 | ABC transporter integral membrane type-1 fused domain profile. | 896 | 1172 | 33.633865 | IPR011527 |
| ProSiteProfiles | PS50929 | ABC transporter integral membrane type-1 fused domain profile. | 278 | 558 | 33.287811 | IPR011527 |
| ProSiteProfiles | PS50893 | ATP-binding cassette, ABC transporter-type domain profile. | 593 | 819 | 20.941826 | IPR003439 |
| ProSitePatterns | PS00211 | ABC transporters family signature. | 721 | 735 | - | IPR017871 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1468 | 1533 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1486 | 1503 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Cellular Component:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G13080.1 | multidrug resistance-associated protein 3. encodes an ATP-dependent MRP-like ABC transporter able to transport glutathione-conjugates as well as chlorophyll catabolites. The expression of this gene is upregulated by herbicide safeners such as benoxacor and fenclorim. | 0 |
| RefSeq | XP_010682873.2 | putative ABC transporter C family member 15 [Beta vulgaris subsp. vulgaris] | 0 |
| Q9LK64 | ABC transporter C family member 3 OS=Arabidopsis thaliana OX=3702 GN=ABCC3 PE=1 SV=1 | 0 | |
| TrEMBL | A0A5B6Z5V5 | ABC-type xenobiotic transporter OS=Davidia involucrata OX=16924 GN=Din_007834 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology