Basic Information
Locus ID:
TC11G0236
Species & Taxonomic ID:
Tamarix chinensis & 189791
Genome Assembly:
GCA_030549775.1
Description:
inactive receptor kinase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr11 | 5417558 | 5429978 | + | TC11G0236 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.03 | 117,485.44 Da | 37.93 | 99.14 | -0.03 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF12799 | Leucine Rich repeats (2 copies) | 293 | 331 | 4.5E-7 | IPR025875 |
| Pfam | PF08263 | Leucine rich repeat N-terminal domain | 64 | 113 | 2.1E-6 | IPR013210 |
| Pfam | PF00560 | Leucine Rich Repeat | 268 | 281 | 1.9 | IPR001611 |
| Pfam | PF00069 | Protein kinase domain | 797 | 996 | 1.5E-26 | IPR000719 |
| SUPERFAMILY | SSF52047 | RNI-like | 146 | 571 | 4.79E-54 | - |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 796 | 1068 | 8.31E-47 | IPR011009 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 267 | 598 | 1.1E-75 | IPR032675 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 64 | 188 | 1.1E-22 | IPR032675 |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 872 | 1073 | 2.7E-34 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 189 | 266 | 4.4E-14 | IPR032675 |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 778 | 870 | 1.6E-10 | - |
| SMART | SM00365 | LRR_sd22_2 | 384 | 406 | 190.0 | - |
| SMART | SM00365 | LRR_sd22_2 | 291 | 316 | 4.0 | - |
| SMART | SM00365 | LRR_sd22_2 | 141 | 173 | 210.0 | - |
| SMART | SM00369 | LRR_typ_2 | 141 | 164 | 280.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 536 | 560 | 200.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 432 | 456 | 170.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 314 | 338 | 2.6 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 291 | 313 | 260.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 213 | 244 | 200.0 | IPR003591 |
| ProSiteProfiles | PS51450 | Leucine-rich repeat profile. | 293 | 315 | 8.066187 | IPR001611 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 793 | 1073 | 27.877207 | IPR000719 |
| ProSiteProfiles | PS51450 | Leucine-rich repeat profile. | 386 | 408 | 7.419328 | IPR001611 |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G10020.1 | Leucine-rich receptor-like protein kinase family protein. | 0 |
| RefSeq | XP_030461927.1 | probable inactive receptor kinase At5g10020 [Syzygium oleosum] | 0 |
| Q0WR59 | Probable inactive receptor kinase At5g10020 OS=Arabidopsis thaliana OX=3702 GN=At5g10020 PE=1 SV=2 | 0 | |
| TrEMBL | D7SW45 | Protein kinase domain-containing protein OS=Vitis vinifera OX=29760 GN=VIT_07s0031g01440 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg39469 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_13329 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah026796 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_6g139480 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg41876, Sbi_jg48251 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg27592 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00017497 |
| Amaranthaceae | Suaeda glauca | 4 | Sgl33307, Sgl38515, Sgl38535, Sgl38552 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000003556, gene:ENSEOMG00000003920 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.6AG0019560, CQ.Regalona.r1.6BG0020640 |
| Anacardiaceae | Pistacia vera | 2 | pistato.v30173430, pistato.v30198920 |
| Apiaceae | Apium graveolens | 2 | Ag3G01270, Ag7G02300 |
| Arecaceae | Cocos nucifera | 1 | COCNU_03G006320 |
| Arecaceae | Phoenix dactylifera | 3 | gene-LOC103700901, gene-LOC103721205, gene-LOC103722440 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_03.1730.V1.1 |
| Asteraceae | Flaveria trinervia | 1 | Ftri6G16381 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT5G10020.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10012534m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp6g33380.v2.2 |
| Brassicaceae | Brassica nigra | 2 | BniB02g051870.2N, BniB08g004360.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq06G1798 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl06G1865 |
| Cymodoceaceae | Cymodocea nodosa | 2 | gene.Cymno04g09940, gene.Cymno11g06410 |
| Hydrocharitaceae | Thalassia testudinum | 2 | gene.Thate01g11980, gene.Thate04g06860 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG02.732 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00014473 |
| Poaceae | Echinochloa crus-galli | 3 | AH03.3773, BH03.4057, CH03.4328 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_7AG0578170, gene-QOZ80_7BG0609460 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.2HG0123080.1 |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_039582 |
| Poaceae | Oryza coarctata | 2 | Oco13G013230, Oco14G014000 |
| Poaceae | Oryza sativa | 1 | LOC_Os07g43350.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_02G358300 |
| Poaceae | Puccinellia tenuiflora | 1 | Pt_Chr0306390 |
| Poaceae | Sporobolus alterniflorus | 4 | Chr19G001830, Chr24G014710, Chr27G015430, Chr28G012190 |
| Poaceae | Thinopyrum elongatum | 1 | Tel2E01G317500 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC2AG020080, gene_TRIDC2BG024120 |
| Poaceae | Triticum aestivum | 3 | TraesCS2A02G159900.2, TraesCS2B02G185800.3 ... |
| Poaceae | Zea mays | 2 | Zm00001eb109780_P002, Zm00001eb327990_P001 |
| Poaceae | Zoysia japonica | 2 | nbis-gene-315, nbis-gene-33015 |
| Poaceae | Zoysia macrostachya | 2 | Zma_g5600, Zma_g6899 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG07.284, evm.TU.LG15.668 |
| Posidoniaceae | Posidonia oceanica | 2 | gene.Posoc01g23730, gene.Posoc04g14500 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_6_RagTag.1632 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-17544 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-16555 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-12142 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000011l.987 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00007483 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-15098 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-4445 |
| Salicaceae | Populus euphratica | 2 | populus_peu13844, populus_peu23001 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132616161 |
| Solanaceae | Solanum chilense | 1 | SOLCI005390200 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107018150 |
| Tamaricaceae | Reaumuria soongarica | 1 | gene_2381 |
| Tamaricaceae | Tamarix chinensis | 2 | TC04G0997, TC11G0236 |
| Zosteraceae | Zostera marina | 2 | Zosma03g30800.v3.1, Zosma06g04140.v3.1 |