Basic Information
Locus ID:
TC10G2609
Species & Taxonomic ID:
Tamarix chinensis & 189791
Genome Assembly:
GCA_030549775.1
Description:
Zinc finger protein VAR3
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr10 | 92754103 | 92790783 | - | TC10G2609 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.73 | 47,480.08 Da | 48.64 | 78.32 | -0.48 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00641 | Zn-finger in Ran binding protein and others | 332 | 356 | 1.6E-6 | IPR001876 |
| Pfam | PF00641 | Zn-finger in Ran binding protein and others | 293 | 316 | 6.1E-5 | IPR001876 |
| Pfam | PF00641 | Zn-finger in Ran binding protein and others | 371 | 395 | 9.6E-7 | IPR001876 |
| SUPERFAMILY | SSF90209 | Ran binding protein zinc finger-like | 368 | 398 | 1.39E-6 | IPR036443 |
| SUPERFAMILY | SSF90209 | Ran binding protein zinc finger-like | 289 | 321 | 2.82E-5 | IPR036443 |
| SUPERFAMILY | SSF90209 | Ran binding protein zinc finger-like | 329 | 358 | 2.62E-6 | IPR036443 |
| Gene3D | G3DSA:4.10.1060.10 | - | 367 | 400 | 2.1E-12 | - |
| Gene3D | G3DSA:4.10.1060.10 | - | 324 | 361 | 9.4E-14 | - |
| Gene3D | G3DSA:4.10.1060.10 | - | 287 | 323 | 1.2E-11 | - |
| SMART | SM00547 | zf_4 | 295 | 319 | 3.8E-5 | IPR001876 |
| SMART | SM00547 | zf_4 | 373 | 397 | 1.3E-6 | IPR001876 |
| SMART | SM00547 | zf_4 | 334 | 358 | 3.9E-7 | IPR001876 |
| ProSiteProfiles | PS50199 | Zinc finger RanBP2 type profile. | 293 | 322 | 9.529128 | IPR001876 |
| ProSiteProfiles | PS50199 | Zinc finger RanBP2 type profile. | 332 | 361 | 9.596881 | IPR001876 |
| ProSiteProfiles | PS50199 | Zinc finger RanBP2 type profile. | 371 | 400 | 9.382329 | IPR001876 |
| ProSitePatterns | PS01358 | Zinc finger RanBP2-type signature. | 375 | 394 | - | IPR001876 |
| ProSitePatterns | PS01358 | Zinc finger RanBP2-type signature. | 336 | 355 | - | IPR001876 |
| Coils | Coil | Coil | 238 | 258 | - | - |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G48570.1 | zinc finger (Ran-binding) family protein. | 0 |
| RefSeq | XP_050256884.1 | zinc finger protein VAR3, chloroplastic isoform X2 [Quercus robur] | 0 |
| TrEMBL | A0A5J5BJ73 | Zinc finger protein VAR3, chloroplastic OS=Nyssa sinensis OX=561372 GN=F0562_023981 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology