Basic Information
Locus ID:
TC10G2405
Species & Taxonomic ID:
Tamarix chinensis & 189791
Genome Assembly:
GCA_030549775.1
Description:
CCR4-associated factor 1 homolog
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr10 | 81622602 | 81623414 | - | TC10G2405 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.30 | 31,180.21 Da | 35.26 | 90.15 | -0.19 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF04857 | CAF1 family ribonuclease | 159 | 241 | 2.1E-7 | IPR006941 |
| Pfam | PF04857 | CAF1 family ribonuclease | 16 | 137 | 1.1E-10 | IPR006941 |
| SUPERFAMILY | SSF53098 | Ribonuclease H-like | 5 | 267 | 2.28E-90 | IPR012337 |
| Gene3D | G3DSA:3.30.420.10 | - | 2 | 269 | 6.3E-102 | IPR036397 |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G80780.1 | Polynucleotidyl transferase, ribonuclease H-like superfamily protein. | 0 |
| RefSeq | XP_012452035.1 | probable CCR4-associated factor 1 homolog 6 [Gossypium raimondii] | 0 |
| Q9SAI2 | Probable CCR4-associated factor 1 homolog 6 OS=Arabidopsis thaliana OX=3702 GN=CAF1-6 PE=1 SV=1 | 0 | |
| TrEMBL | A0A7C9D794 | poly(A)-specific ribonuclease OS=Opuntia streptacantha OX=393608 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology