Basic Information
Locus ID:
TC10G2306
Species & Taxonomic ID:
Tamarix chinensis & 189791
Genome Assembly:
GCA_030549775.1
Description:
ABC transporter C family member
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr10 | 75811871 | 75818613 | - | TC10G2306 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.95 | 185,449.56 Da | 39.55 | 103.68 | 0.11 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd18580 | ABC_6TM_ABCC_D2 | 938 | 1232 | 3.16947E-87 | IPR044726 |
| CDD | cd03250 | ABCC_MRP_domain1 | 625 | 825 | 1.5655E-104 | - |
| CDD | cd18579 | ABC_6TM_ABCC_D1 | 311 | 599 | 1.12726E-90 | IPR044746 |
| CDD | cd03244 | ABCC_MRP_domain2 | 1255 | 1475 | 2.58202E-123 | - |
| Pfam | PF00664 | ABC transporter transmembrane region | 941 | 1184 | 1.2E-30 | IPR011527 |
| Pfam | PF00664 | ABC transporter transmembrane region | 311 | 578 | 2.2E-29 | IPR011527 |
| Pfam | PF00005 | ABC transporter | 1274 | 1422 | 1.5E-29 | IPR003439 |
| Pfam | PF00005 | ABC transporter | 643 | 777 | 7.4E-18 | IPR003439 |
| SUPERFAMILY | SSF90123 | ABC transporter transmembrane region | 937 | 1239 | 2.09E-46 | IPR036640 |
| SUPERFAMILY | SSF90123 | ABC transporter transmembrane region | 309 | 607 | 6.8E-37 | IPR036640 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 1249 | 1489 | 1.9E-66 | IPR027417 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 620 | 846 | 6.52E-54 | IPR027417 |
| Gene3D | G3DSA:1.20.1560.10 | ABC transporter type 1, transmembrane domain | 903 | 1238 | 4.1E-52 | IPR036640 |
| Gene3D | G3DSA:3.40.50.300 | - | 1240 | 1493 | 4.5E-81 | IPR027417 |
| Gene3D | G3DSA:1.20.1560.10 | ABC transporter type 1, transmembrane domain | 292 | 608 | 3.5E-51 | IPR036640 |
| Gene3D | G3DSA:3.40.50.300 | - | 636 | 870 | 2.6E-67 | IPR027417 |
| SMART | SM00382 | AAA_5 | 1283 | 1468 | 1.3E-12 | IPR003593 |
| SMART | SM00382 | AAA_5 | 652 | 825 | 5.1E-13 | IPR003593 |
| ProSiteProfiles | PS50893 | ATP-binding cassette, ABC transporter-type domain profile. | 1257 | 1491 | 16.740168 | IPR003439 |
| ProSiteProfiles | PS50929 | ABC transporter integral membrane type-1 fused domain profile. | 940 | 1220 | 31.591763 | IPR011527 |
| ProSiteProfiles | PS50893 | ATP-binding cassette, ABC transporter-type domain profile. | 616 | 848 | 21.588747 | IPR003439 |
| ProSiteProfiles | PS50929 | ABC transporter integral membrane type-1 fused domain profile. | 313 | 591 | 37.351101 | IPR011527 |
| ProSitePatterns | PS00211 | ABC transporters family signature. | 750 | 764 | - | IPR017871 |
| Coils | Coil | Coil | 1647 | 1664 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Cellular Component:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G60160.1 | multidrug resistance-associated protein 9. member of MRP subfamily | 0 |
| RefSeq | XP_010691965.1 | putative ABC transporter C family member 15 [Beta vulgaris subsp. vulgaris] | 0 |
| Q9M1C7 | ABC transporter C family member 9 OS=Arabidopsis thaliana OX=3702 GN=ABCC9 PE=2 SV=2 | 0 | |
| TrEMBL | A0A5B6Z841 | ABC-type xenobiotic transporter OS=Davidia involucrata OX=16924 GN=Din_009833 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology