Basic Information
Locus ID:
TC10G2176
Species & Taxonomic ID:
Tamarix chinensis & 189791
Genome Assembly:
GCA_030549775.1
Description:
Organic cation carnitine transporter
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr10 | 68451912 | 68471799 | - | TC10G2176 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.57 | 53,505.11 Da | 37.86 | 108.31 | 0.53 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00083 | Sugar (and other) transporter | 56 | 221 | 3.6E-32 | IPR005828 |
| Pfam | PF07690 | Major Facilitator Superfamily | 339 | 477 | 7.2E-9 | IPR011701 |
| SUPERFAMILY | SSF103473 | MFS general substrate transporter | 9 | 479 | 1.96E-67 | IPR036259 |
| Gene3D | G3DSA:1.20.1250.20 | MFS general substrate transporter like domains | 17 | 481 | 1.7E-83 | IPR036259 |
| ProSiteProfiles | PS50850 | Major facilitator superfamily (MFS) profile. | 24 | 474 | 37.898811 | IPR020846 |
| ProSitePatterns | PS00216 | Sugar transport proteins signature 1. | 350 | 365 | - | IPR005829 |
Gene Ontology
Biological Process:
Molecular Function:
Cellular Component:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G13050.1 | Major facilitator superfamily protein. | 0 |
| RefSeq | XP_040985761.1 | organic cation/carnitine transporter 7 isoform X1 [Juglans microcarpa x Juglans regia] | 0 |
| Q940M4 | Organic cation/carnitine transporter 7 OS=Arabidopsis thaliana OX=3702 GN=OCT7 PE=2 SV=1 | 0 | |
| TrEMBL | A0A5N6QED4 | MFS domain-containing protein OS=Carpinus fangiana OX=176857 GN=FH972_002164 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology