halophFGD

Basic Information

Locus ID: TC10G1897

Species & Taxonomic ID: Tamarix chinensis & 189791

Genome Assembly: GCA_030549775.1

Description:

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
chr10	56315231	56315605	-	TC10G1897

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
7.68	13,793.88 Da	32.32	84.40	-0.07

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
Pfam	PF00161	Ribosome inactivating protein	2	51	8.6E-6	IPR001574
SUPERFAMILY	SSF56371	Ribosome inactivating proteins (RIP)	2	96	1.96E-9	IPR036041
Gene3D	G3DSA:4.10.470.10	Ricin (A Subunit), domain 2	12	109	4.3E-5	IPR016139

Gene Ontology

Biological Process:

GO:0017148 (negative regulation of translation)

Molecular Function:

GO:0030598 (rRNA N-glycosylase activity)

Best hit

Source	Best Hit ID	Description	E-value

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
No sample metadata found.

Network

No network data available for this species.

Orthology

Family	Species	Count	Orthologous Genes
Aizoaceae	Mesembryanthemum crystallinum	1	gene_5285
Arecaceae	Cocos nucifera	2	COCNU_08G005590, contig69358227G000010
Arecaceae	Phoenix dactylifera	2	gene-LOC103696813, gene-LOC120104334
Plumbaginaceae	Limonium bicolor	5	Lb2G11260, Lb3G18653, Lb4G25712, Lb6G29913, Lb6G30260
Poaceae	Echinochloa crus-galli	7	AH05.2679, AH09.116, BH02.2643, BH04.679, BH04.682 ... BH05.2772, CH02.3888
Poaceae	Eleusine coracana subsp. coracana	10	gene-QOZ80_1AG0010670, gene-QOZ80_1AG0010680 ... gene-QOZ80_1BG0059180, gene-QOZ80_1BG0059190, gene-QOZ80_1BG0059200, gene-QOZ80_5AG0375470, gene-QOZ80_5AG0404620, gene-QOZ80_7AG0559480, gene-QOZ80_7BG0590780, gene-QOZ80_9BG0699670
Poaceae	Hordeum vulgare	7	HORVU.MOREX.r3.1HG0059440.1.CDS1 ... HORVU.MOREX.r3.4HG0349720.1.CDS1, HORVU.MOREX.r3.5HG0520010.1.CDS1, HORVU.MOREX.r3.5HG0525770.1.CDS1, HORVU.MOREX.r3.5HG0525790.1.CDS1, HORVU.MOREX.r3.7HG0685280.1.CDS1, HORVU.MOREX.r3.7HG0731900.1.CDS1
Poaceae	Lolium multiflorum	6	gene-QYE76_017620, gene-QYE76_018881, gene-QYE76_020496 ... gene-QYE76_027015, gene-QYE76_035671, gene-QYE76_059141
Poaceae	Oryza coarctata	5	Oco01G002570, Oco02G002460, Oco02G002620, Oco13G004140 ... Oco14G004790
Poaceae	Oryza sativa	4	LOC_Os01g06740.1, LOC_Os07g09070.1, LOC_Os11g06490.1 ... LOC_Os11g06630.1
Poaceae	Paspalum vaginatum	3	gene-BS78_05G008100, gene-BS78_06G018300, gene-BS78_K036200
Poaceae	Puccinellia tenuiflora	5	Pt_Chr0300096, Pt_Chr0300140, Pt_Chr0307128, Pt_Chr0604834 ... Pt_Chr0702485
Poaceae	Sporobolus alterniflorus	3	Chr09G008370, Chr23G018840, Chr26G000910
Poaceae	Thinopyrum elongatum	3	Tel1E01G016500, Tel5E01G754000, Tel6E01G047400
Poaceae	Triticum dicoccoides	7	gene_TRIDC1AG035240, gene_TRIDC5AG067880 ... gene_TRIDC5AG067930, gene_TRIDC5BG073200, gene_TRIDC5BG073240, gene_TRIDC5BG073250, gene_TRIDC7AG062160
Poaceae	Triticum aestivum	19	TraesCS1A02G234300.1.cds1, TraesCS1B02G249200.1 ... TraesCS1D02G237700.1.cds1, TraesCS5A02G474900.1, TraesCS5A02G475300.1.cds1, TraesCS5A02G475400.1.cds1, TraesCS5A02G475500.1, TraesCS5B02G488300.1, TraesCS5B02G488400.1.cds1, TraesCS5B02G488500.1.cds1, TraesCS5B02G488600.1, TraesCS5B02G488700.1.cds1, TraesCS5B02G488800.1.cds1, TraesCS5D02G487600.1.cds1, TraesCS5D02G487700.1.cds1, TraesCS6D02G014500.1.cds1, TraesCS7A02G448400.1, TraesCSU02G183200.1.cds1, TraesCSU02G183400.1.cds1
Poaceae	Zea mays	4	Zm00001eb089930_P001, Zm00001eb092600_P002 ... Zm00001eb326540_P001, Zm00001eb350070_P001
Poaceae	Zoysia japonica	5	nbis-gene-35947, nbis-gene-48487, nbis-gene-51497 ... nbis-gene-52906, nbis-gene-6893
Poaceae	Zoysia macrostachya	2	Zma_g10001, Zma_g26746
Salicaceae	Populus euphratica	2	populus_peu15557, populus_peu15561
Tamaricaceae	Reaumuria soongarica	2	STRG.25961_chr11_-, STRG.26439_chr11_+
Tamaricaceae	Tamarix chinensis	6	TC10G1896, TC10G1897, TC10G1898, TC10G1900, TC10G1903 ... TC10G1904