Basic Information
Locus ID:
TC10G1874
Species & Taxonomic ID:
Tamarix chinensis & 189791
Genome Assembly:
GCA_030549775.1
Description:
E3 ubiquitin-protein ligase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr10 | 55271486 | 55293603 | - | TC10G1874 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.95 | 29,738.68 Da | 55.03 | 95.60 | -0.11 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16495 | RING_CH-C4HC3_MARCH | 72 | 120 | 3.36471E-17 | - |
| Pfam | PF12906 | RING-variant domain | 72 | 119 | 1.2E-10 | IPR011016 |
| SUPERFAMILY | SSF57850 | RING/U-box | 67 | 123 | 9.71E-15 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 65 | 124 | 6.3E-17 | IPR013083 |
| SMART | SM00744 | ringv_2 | 71 | 120 | 7.6E-16 | IPR011016 |
| ProSiteProfiles | PS51292 | Zinc finger RING-CH-type profile. | 64 | 126 | 20.473267 | IPR011016 |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G50440.1 | RING/FYVE/PHD zinc finger superfamily protein. | 0 |
| RefSeq | XP_010694496.1 | E3 ubiquitin-protein ligase MARCHF8 isoform X1 [Beta vulgaris subsp. vulgaris] | 0 |
| TrEMBL | A0A0J8BEF4 | RING-CH-type domain-containing protein OS=Beta vulgaris subsp. vulgaris OX=3555 GN=BVRB_4g093560 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology