Basic Information
Locus ID:
TC10G1797
Species & Taxonomic ID:
Tamarix chinensis & 189791
Genome Assembly:
GCA_030549775.1
Description:
RING-H2 finger protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr10 | 52547688 | 52548932 | + | TC10G1797 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.00 | 43,167.29 Da | 51.53 | 89.11 | -0.14 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16454 | RING-H2_PA-TM-RING | 333 | 376 | 2.8617E-15 | - |
| Pfam | PF13639 | Ring finger domain | 333 | 376 | 8.9E-11 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 326 | 378 | 3.53E-18 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 304 | 380 | 4.0E-18 | IPR013083 |
| SMART | SM00184 | ring_2 | 334 | 375 | 1.8E-5 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 334 | 376 | 11.677863 | IPR001841 |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G46495.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_017609207.1 | PREDICTED: putative RING-H2 finger protein ATL21A [Gossypium arboreum] | 0 |
| P0CH01 | Putative RING-H2 finger protein ATL21A OS=Arabidopsis thaliana OX=3702 GN=ATL21A PE=3 SV=1 | 0 | |
| TrEMBL | A0A5B6W3Z5 | Zinc finger, RING-type OS=Gossypium australe OX=47621 GN=EPI10_026070 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology